Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
CLRN1P58418 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.47■□□□□ 0.71
CLRN1P58418 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.47■□□□□ 0.71
CLRN1P58418 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN1P58418 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CLRN1P58418 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN1P58418 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
CLRN1P58418 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CLRN1P58418 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CLRN1P58418 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.46■□□□□ 0.71
CLRN1P58418 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
CLRN1P58418 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CLRN1P58418 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CLRN1P58418 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CLRN1P58418 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN1P58418 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.46■□□□□ 0.71
CLRN1P58418 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.45■□□□□ 0.7
CLRN1P58418 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.45■□□□□ 0.7
CLRN1P58418 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
CLRN1P58418 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.45■□□□□ 0.7
CLRN1P58418 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN1P58418 EP400NL-214ENST00000641289 2402 ntBASIC19.44■□□□□ 0.7
CLRN1P58418 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLRN1P58418 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.44■□□□□ 0.7
CLRN1P58418 SERBP1P1-201ENST00000396021 1160 ntBASIC19.44■□□□□ 0.7
CLRN1P58418 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.44■□□□□ 0.7
CLRN1P58418 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.44■□□□□ 0.7
CLRN1P58418 AL138724.1-201ENST00000606771 1088 ntBASIC19.44■□□□□ 0.7
CLRN1P58418 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.44■□□□□ 0.7
CLRN1P58418 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CLRN1P58418 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLRN1P58418 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLRN1P58418 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLRN1P58418 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
CLRN1P58418 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.44■□□□□ 0.7
CLRN1P58418 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLRN1P58418 LINC00526-201ENST00000581067 1875 ntBASIC19.43■□□□□ 0.7
CLRN1P58418 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLRN1P58418 AC080038.3-201ENST00000623346 1952 ntBASIC19.43■□□□□ 0.7
CLRN1P58418 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.43■□□□□ 0.7
CLRN1P58418 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLRN1P58418 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLRN1P58418 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.43■□□□□ 0.7
CLRN1P58418 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.43■□□□□ 0.7
CLRN1P58418 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLRN1P58418 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.43■□□□□ 0.7
CLRN1P58418 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
CLRN1P58418 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLRN1P58418 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLRN1P58418 AC008406.3-201ENST00000620001 1374 ntBASIC19.43■□□□□ 0.7
CLRN1P58418 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CLRN1P58418 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLRN1P58418 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
CLRN1P58418 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CLRN1P58418 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.42■□□□□ 0.7
CLRN1P58418 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLRN1P58418 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CLRN1P58418 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLRN1P58418 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CLRN1P58418 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLRN1P58418 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CLRN1P58418 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLRN1P58418 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN1P58418 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLRN1P58418 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.41■□□□□ 0.7
CLRN1P58418 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN1P58418 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN1P58418 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN1P58418 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN1P58418 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN1P58418 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.41■□□□□ 0.7
CLRN1P58418 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.41■□□□□ 0.7
CLRN1P58418 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.41■□□□□ 0.7
CLRN1P58418 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN1P58418 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.41■□□□□ 0.7
CLRN1P58418 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN1P58418 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.41■□□□□ 0.7
CLRN1P58418 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN1P58418 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms