Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXA1P55317 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXA1P55317 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 MIR6724-1-201ENST00000616420 92 ntBASIC21.15■□□□□ 0.98
FOXA1P55317 MIR6724-2-201ENST00000616483 92 ntBASIC21.15■□□□□ 0.98
FOXA1P55317 MIR6724-4-201ENST00000617390 92 ntBASIC21.15■□□□□ 0.98
FOXA1P55317 MIR6724-3-201ENST00000622482 92 ntBASIC21.15■□□□□ 0.98
FOXA1P55317 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.14■□□□□ 0.98
FOXA1P55317 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
FOXA1P55317 AC026310.3-201ENST00000625186 2373 ntBASIC21.14■□□□□ 0.97
FOXA1P55317 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA1P55317 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXA1P55317 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA1P55317 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA1P55317 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA1P55317 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA1P55317 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
FOXA1P55317 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA1P55317 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA1P55317 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
FOXA1P55317 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
FOXA1P55317 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.13■□□□□ 0.97
FOXA1P55317 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
FOXA1P55317 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.13■□□□□ 0.97
FOXA1P55317 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.13■□□□□ 0.97
FOXA1P55317 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
FOXA1P55317 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.13■□□□□ 0.97
FOXA1P55317 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.13■□□□□ 0.97
FOXA1P55317 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
FOXA1P55317 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXA1P55317 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.13■□□□□ 0.97
FOXA1P55317 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
FOXA1P55317 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXA1P55317 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.13■□□□□ 0.97
FOXA1P55317 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXA1P55317 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.12■□□□□ 0.97
FOXA1P55317 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
FOXA1P55317 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
FOXA1P55317 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXA1P55317 AL117332.1-201ENST00000622628 974 ntBASIC21.12■□□□□ 0.97
FOXA1P55317 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
FOXA1P55317 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXA1P55317 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.12■□□□□ 0.97
FOXA1P55317 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA1P55317 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXA1P55317 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
FOXA1P55317 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.11■□□□□ 0.97
FOXA1P55317 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
FOXA1P55317 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXA1P55317 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
FOXA1P55317 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.11■□□□□ 0.97
FOXA1P55317 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
FOXA1P55317 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.11■□□□□ 0.97
FOXA1P55317 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.11■□□□□ 0.97
FOXA1P55317 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
FOXA1P55317 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXA1P55317 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
FOXA1P55317 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXA1P55317 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXA1P55317 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
FOXA1P55317 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 AC006455.2-201ENST00000429931 906 ntBASIC21.1■□□□□ 0.97
FOXA1P55317 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.1■□□□□ 0.97
FOXA1P55317 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.1■□□□□ 0.97
FOXA1P55317 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA1P55317 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.09■□□□□ 0.97
FOXA1P55317 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
FOXA1P55317 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms