Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SOX9P48436 AC011767.1-201ENST00000617410 1153 ntBASIC22.41■■□□□ 1.18
SOX9P48436 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SOX9P48436 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.41■■□□□ 1.18
SOX9P48436 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SOX9P48436 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC22.41■■□□□ 1.18
SOX9P48436 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX9P48436 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX9P48436 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SOX9P48436 AL355802.2-201ENST00000402069 882 ntBASIC22.4■■□□□ 1.18
SOX9P48436 SPI1-203ENST00000533030 661 ntTSL 2 BASIC22.4■■□□□ 1.18
SOX9P48436 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SOX9P48436 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.4■■□□□ 1.18
SOX9P48436 ESRRAP2-201ENST00000418437 1549 ntBASIC22.4■■□□□ 1.18
SOX9P48436 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX9P48436 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.4■■□□□ 1.18
SOX9P48436 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX9P48436 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX9P48436 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SOX9P48436 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
SOX9P48436 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SOX9P48436 AC079140.4-201ENST00000507448 529 ntBASIC22.39■■□□□ 1.17
SOX9P48436 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC22.39■■□□□ 1.17
SOX9P48436 AL109923.1-201ENST00000618799 583 ntBASIC22.39■■□□□ 1.17
SOX9P48436 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.39■■□□□ 1.17
SOX9P48436 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
SOX9P48436 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC22.39■■□□□ 1.17
SOX9P48436 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SOX9P48436 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22.38■■□□□ 1.17
SOX9P48436 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX9P48436 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SOX9P48436 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.38■■□□□ 1.17
SOX9P48436 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SOX9P48436 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC22.38■■□□□ 1.17
SOX9P48436 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
SOX9P48436 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX9P48436 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.38■■□□□ 1.17
SOX9P48436 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX9P48436 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC22.38■■□□□ 1.17
SOX9P48436 WT1-AS_3.1-201ENST00000613262 234 ntBASIC22.38■■□□□ 1.17
SOX9P48436 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.38■■□□□ 1.17
SOX9P48436 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.38■■□□□ 1.17
SOX9P48436 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX9P48436 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
SOX9P48436 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX9P48436 OXCT2P1-201ENST00000447263 1535 ntBASIC22.37■■□□□ 1.17
SOX9P48436 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SOX9P48436 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SOX9P48436 MIR663A-201ENST00000385250 93 ntBASIC22.37■■□□□ 1.17
SOX9P48436 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SOX9P48436 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SOX9P48436 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC22.37■■□□□ 1.17
SOX9P48436 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SOX9P48436 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SOX9P48436 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.37■■□□□ 1.17
SOX9P48436 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.37■■□□□ 1.17
SOX9P48436 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SOX9P48436 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SOX9P48436 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC22.36■■□□□ 1.17
SOX9P48436 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC22.36■■□□□ 1.17
SOX9P48436 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
SOX9P48436 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
SOX9P48436 AL139125.2-201ENST00000623134 1869 ntBASIC22.36■■□□□ 1.17
SOX9P48436 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SOX9P48436 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.36■■□□□ 1.17
SOX9P48436 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.35■■□□□ 1.17
SOX9P48436 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SOX9P48436 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.35■■□□□ 1.17
SOX9P48436 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.34■■□□□ 1.17
SOX9P48436 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SOX9P48436 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SOX9P48436 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
SOX9P48436 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC22.34■■□□□ 1.17
SOX9P48436 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC22.34■■□□□ 1.17
SOX9P48436 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
SOX9P48436 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.34■■□□□ 1.17
SOX9P48436 CPT2-209ENST00000636935 803 ntTSL 5 BASIC22.34■■□□□ 1.17
SOX9P48436 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SOX9P48436 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SOX9P48436 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
SOX9P48436 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SOX9P48436 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SOX9P48436 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SOX9P48436 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SOX9P48436 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.33■■□□□ 1.17
SOX9P48436 NCF1B-203ENST00000435988 1254 ntBASIC22.33■■□□□ 1.17
SOX9P48436 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC22.33■■□□□ 1.17
SOX9P48436 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.33■■□□□ 1.17
SOX9P48436 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC22.33■■□□□ 1.17
SOX9P48436 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SOX9P48436 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.33■■□□□ 1.16
SOX9P48436 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SOX9P48436 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
SOX9P48436 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.32■■□□□ 1.16
SOX9P48436 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SOX9P48436 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SOX9P48436 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.32■■□□□ 1.16
SOX9P48436 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.32■■□□□ 1.16
SOX9P48436 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SOX9P48436 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms