Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC29.3■■■□□ 2.28
COL18A1P39060 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC29.3■■■□□ 2.28
COL18A1P39060 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL18A1P39060 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC29.3■■■□□ 2.28
COL18A1P39060 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC29.3■■■□□ 2.28
COL18A1P39060 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL18A1P39060 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC29.29■■■□□ 2.28
COL18A1P39060 AC098934.4-201ENST00000564127 592 ntBASIC29.29■■■□□ 2.28
COL18A1P39060 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL18A1P39060 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
COL18A1P39060 ASL-203ENST00000380839 1765 ntTSL 5 BASIC29.29■■■□□ 2.28
COL18A1P39060 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL18A1P39060 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL18A1P39060 UQCRFS1P1-201ENST00000435169 820 ntBASIC29.29■■■□□ 2.28
COL18A1P39060 CNN2P6-201ENST00000439038 900 ntBASIC29.29■■■□□ 2.28
COL18A1P39060 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL18A1P39060 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL18A1P39060 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL18A1P39060 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
COL18A1P39060 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC29.28■■■□□ 2.28
COL18A1P39060 TSPY6P-201ENST00000448518 926 ntBASIC29.28■■■□□ 2.28
COL18A1P39060 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC29.28■■■□□ 2.28
COL18A1P39060 LINC00543-201ENST00000567234 1845 ntBASIC29.28■■■□□ 2.28
COL18A1P39060 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL18A1P39060 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC29.27■■■□□ 2.28
COL18A1P39060 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC29.27■■■□□ 2.28
COL18A1P39060 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC29.27■■■□□ 2.28
COL18A1P39060 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
COL18A1P39060 MIR4651-201ENST00000582622 73 ntBASIC29.27■■■□□ 2.28
COL18A1P39060 TFG-210ENST00000620299 1289 ntTSL 5 BASIC29.27■■■□□ 2.28
COL18A1P39060 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
COL18A1P39060 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC29.27■■■□□ 2.28
COL18A1P39060 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC29.27■■■□□ 2.28
COL18A1P39060 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC29.26■■■□□ 2.28
COL18A1P39060 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
COL18A1P39060 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC29.26■■■□□ 2.28
COL18A1P39060 OAS3-207ENST00000551007 998 ntTSL 2 BASIC29.26■■■□□ 2.28
COL18A1P39060 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC29.26■■■□□ 2.27
COL18A1P39060 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC29.26■■■□□ 2.27
COL18A1P39060 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL18A1P39060 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
COL18A1P39060 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL18A1P39060 AL121832.2-201ENST00000610979 668 ntBASIC29.26■■■□□ 2.27
COL18A1P39060 AC231657.2-201ENST00000624556 255 ntBASIC29.26■■■□□ 2.27
COL18A1P39060 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL18A1P39060 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL18A1P39060 KRT18P6-201ENST00000555540 1265 ntBASIC29.25■■■□□ 2.27
COL18A1P39060 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL18A1P39060 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC29.25■■■□□ 2.27
COL18A1P39060 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL18A1P39060 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL18A1P39060 CD99P1-205ENST00000527459 561 ntBASIC29.24■■■□□ 2.27
COL18A1P39060 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL18A1P39060 OXCT2P1-201ENST00000447263 1535 ntBASIC29.24■■■□□ 2.27
COL18A1P39060 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL18A1P39060 AL353803.4-201ENST00000565882 1934 ntBASIC29.24■■■□□ 2.27
COL18A1P39060 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC29.24■■■□□ 2.27
COL18A1P39060 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC29.24■■■□□ 2.27
COL18A1P39060 AL138781.1-201ENST00000566567 1274 ntBASIC29.24■■■□□ 2.27
COL18A1P39060 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL18A1P39060 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC29.24■■■□□ 2.27
COL18A1P39060 MYCNOS-205ENST00000641950 531 ntBASIC29.24■■■□□ 2.27
COL18A1P39060 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
COL18A1P39060 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC29.23■■■□□ 2.27
COL18A1P39060 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC29.23■■■□□ 2.27
COL18A1P39060 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC29.23■■■□□ 2.27
COL18A1P39060 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC29.23■■■□□ 2.27
COL18A1P39060 MDK-213ENST00000617138 635 ntTSL 2 BASIC29.23■■■□□ 2.27
COL18A1P39060 TMEM191A-211ENST00000637163 1067 ntBASIC29.23■■■□□ 2.27
COL18A1P39060 AC066615.1-201ENST00000640911 628 ntBASIC29.23■■■□□ 2.27
COL18A1P39060 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
COL18A1P39060 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC29.22■■■□□ 2.27
COL18A1P39060 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC29.22■■■□□ 2.27
COL18A1P39060 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
COL18A1P39060 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
COL18A1P39060 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
COL18A1P39060 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
COL18A1P39060 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL18A1P39060 AC069152.1-201ENST00000438030 544 ntBASIC29.21■■■□□ 2.27
COL18A1P39060 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC29.21■■■□□ 2.27
COL18A1P39060 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL18A1P39060 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
COL18A1P39060 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC29.21■■■□□ 2.27
COL18A1P39060 DUSP8P3-201ENST00000399571 1760 ntBASIC29.21■■■□□ 2.27
COL18A1P39060 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL18A1P39060 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL18A1P39060 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC29.21■■■□□ 2.27
COL18A1P39060 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
COL18A1P39060 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC29.2■■■□□ 2.26
COL18A1P39060 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.2■■■□□ 2.26
COL18A1P39060 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
COL18A1P39060 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
COL18A1P39060 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
COL18A1P39060 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC29.19■■■□□ 2.26
COL18A1P39060 PARP1-202ENST00000366792 553 ntTSL 3 BASIC29.19■■■□□ 2.26
COL18A1P39060 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC29.19■■■□□ 2.26
COL18A1P39060 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
COL18A1P39060 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL18A1P39060 TSPY20P-201ENST00000450910 630 ntBASIC29.18■■■□□ 2.26
COL18A1P39060 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC29.18■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms