Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	WRS1	YOL097C	1299 nt		4.18	□□□□□ -1.74
SHP1	P34223	YBR089W	YBR089W	600 nt		4.18	□□□□□ -1.74
SHP1	P34223	MIH1	YMR036C	1665 nt		4.18	□□□□□ -1.74
SHP1	P34223	HSP82	YPL240C	2130 nt		4.18	□□□□□ -1.74
SHP1	P34223	AAD3	YCR107W	1092 nt		4.17	□□□□□ -1.74
SHP1	P34223	YDR124W	YDR124W	975 nt		4.17	□□□□□ -1.74
SHP1	P34223	RNH202	YDR279W	1053 nt		4.17	□□□□□ -1.74
SHP1	P34223	LPP1	YDR503C	825 nt		4.17	□□□□□ -1.74
SHP1	P34223	FMP32	YFL046W	624 nt		4.17	□□□□□ -1.74
SHP1	P34223	YML119W	YML119W	1074 nt		4.17	□□□□□ -1.74
SHP1	P34223	RUF20	RUF20	443 nt		4.17	□□□□□ -1.74
SHP1	P34223	OPY1	YBR129C	987 nt		4.17	□□□□□ -1.74
SHP1	P34223	IZH3	YLR023C	1632 nt		4.17	□□□□□ -1.74
SHP1	P34223	RKM3	YBR030W	1659 nt		4.16	□□□□□ -1.74
SHP1	P34223	TCA17	YEL048C	459 nt		4.16	□□□□□ -1.74
SHP1	P34223	RPL8A	YHL033C	771 nt		4.16	□□□□□ -1.74
SHP1	P34223	BNA1	YJR025C	534 nt		4.16	□□□□□ -1.74
SHP1	P34223	RPS1B	YML063W	768 nt		4.16	□□□□□ -1.74
SHP1	P34223	SHE1	YBL031W	1017 nt		4.16	□□□□□ -1.74
SHP1	P34223	ATG16	YMR159C	453 nt		4.16	□□□□□ -1.74
SHP1	P34223	RAD14	YMR201C	1116 nt		4.16	□□□□□ -1.74
SHP1	P34223	RPS10B	YMR230W	318 nt		4.16	□□□□□ -1.74
SHP1	P34223	MDJ2	YNL328C	441 nt		4.16	□□□□□ -1.74
SHP1	P34223	PNT1	YOR266W	1272 nt		4.16	□□□□□ -1.74
SHP1	P34223	SET6	YPL165C	1122 nt		4.16	□□□□□ -1.74
SHP1	P34223	ATG29	YPL166W	642 nt		4.16	□□□□□ -1.74
SHP1	P34223	BMT2	YBR141C	1014 nt		4.16	□□□□□ -1.74
SHP1	P34223	TPA1	YER049W	1935 nt		4.16	□□□□□ -1.74
SHP1	P34223	NAM9	YNL137C	1461 nt		4.16	□□□□□ -1.74
SHP1	P34223	SKM1	YOL113W	1968 nt		4.16	□□□□□ -1.74
SHP1	P34223	PTM1	YKL039W	1572 nt		4.15	□□□□□ -1.74
SHP1	P34223	AGA1	YNR044W	2178 nt		4.15	□□□□□ -1.75
SHP1	P34223	YCL068C	YCL068C	783 nt		4.15	□□□□□ -1.75
SHP1	P34223	YDR090C	YDR090C	933 nt		4.15	□□□□□ -1.75
SHP1	P34223	BCP1	YDR361C	852 nt		4.15	□□□□□ -1.75
SHP1	P34223	IMP2	YMR035W	534 nt		4.15	□□□□□ -1.75
SHP1	P34223	YOR034C-A	YOR034C-A	243 nt		4.15	□□□□□ -1.75
SHP1	P34223	MUM2	YBR057C	1101 nt		4.15	□□□□□ -1.75
SHP1	P34223	MRH4	YGL064C	1686 nt		4.15	□□□□□ -1.75
SHP1	P34223	MTH1	YDR277C	1302 nt		4.15	□□□□□ -1.75
SHP1	P34223	TRM1	YDR120C	1713 nt		4.15	□□□□□ -1.75
SHP1	P34223	SRP72	YPL210C	1923 nt		4.15	□□□□□ -1.75
SHP1	P34223	BBC1	YJL020C	3474 nt		4.15	□□□□□ -1.75
SHP1	P34223	TGL4	YKR089C	2733 nt		4.15	□□□□□ -1.75
SHP1	P34223	LRG1	YDL240W	3054 nt		4.14	□□□□□ -1.75
SHP1	P34223	MNN1	YER001W	2289 nt		4.14	□□□□□ -1.75
SHP1	P34223	MRPL32	YCR003W	552 nt		4.14	□□□□□ -1.75
SHP1	P34223	YCR015C	YCR015C	954 nt		4.14	□□□□□ -1.75
SHP1	P34223	YDL186W	YDL186W	834 nt		4.14	□□□□□ -1.75
SHP1	P34223	DCG1	YIR030C	735 nt		4.14	□□□□□ -1.75
SHP1	P34223	YAL069W	YAL069W	315 nt		4.14	□□□□□ -1.75
SHP1	P34223	YLR198C	YLR198C	360 nt		4.14	□□□□□ -1.75
SHP1	P34223	ILV5	YLR355C	1188 nt		4.14	□□□□□ -1.75
SHP1	P34223	PRX1	YBL064C	786 nt		4.14	□□□□□ -1.75
SHP1	P34223	YOR314W	YOR314W	330 nt		4.14	□□□□□ -1.75
SHP1	P34223	OPY2	YPR075C	1083 nt		4.14	□□□□□ -1.75
SHP1	P34223	YPR142C	YPR142C	564 nt		4.14	□□□□□ -1.75
SHP1	P34223	YDR261C-D	YDR261C-D	4815 nt		4.14	□□□□□ -1.75
SHP1	P34223	HFD1	YMR110C	1599 nt		4.14	□□□□□ -1.75
SHP1	P34223	PDR12	YPL058C	4536 nt		4.14	□□□□□ -1.75
SHP1	P34223	AVT1	YJR001W	1809 nt		4.14	□□□□□ -1.75
SHP1	P34223	PUF2	YPR042C	3228 nt		4.14	□□□□□ -1.75
SHP1	P34223	NOG1	YPL093W	1944 nt		4.13	□□□□□ -1.75
SHP1	P34223	SMF1	YOL122C	1728 nt		4.13	□□□□□ -1.75
SHP1	P34223	MCM7	YBR202W	2538 nt		4.13	□□□□□ -1.75
SHP1	P34223	RRN11	YML043C	1524 nt		4.13	□□□□□ -1.75
SHP1	P34223	YDR193W	YDR193W	399 nt		4.13	□□□□□ -1.75
SHP1	P34223	DAM1	YGR113W	1032 nt		4.13	□□□□□ -1.75
SHP1	P34223	PAN5	YHR063C	1140 nt		4.13	□□□□□ -1.75
SHP1	P34223	AAD10	YJR155W	867 nt		4.13	□□□□□ -1.75
SHP1	P34223	NSE1	YLR007W	1011 nt		4.13	□□□□□ -1.75
SHP1	P34223	YMR085W	YMR085W	1299 nt		4.13	□□□□□ -1.75
SHP1	P34223	SIW14	YNL032W	846 nt		4.13	□□□□□ -1.75
SHP1	P34223	TOM7	YNL070W	183 nt		4.13	□□□□□ -1.75
SHP1	P34223	YNL162W-A	YNL162W-A	219 nt		4.13	□□□□□ -1.75
SHP1	P34223	HUL4	YJR036C	2679 nt		4.13	□□□□□ -1.75
SHP1	P34223	TEL1	YBL088C	8364 nt		4.13	□□□□□ -1.75
SHP1	P34223	STB2	YMR053C	2553 nt		4.12	□□□□□ -1.75
SHP1	P34223	ACE2	YLR131C	2313 nt		4.12	□□□□□ -1.75
SHP1	P34223	POL31	YJR006W	1464 nt		4.12	□□□□□ -1.75
SHP1	P34223	RRP8	YDR083W	1179 nt		4.12	□□□□□ -1.75
SHP1	P34223	CTH1	YDR151C	978 nt		4.12	□□□□□ -1.75
SHP1	P34223	tC(GCA)B	tC(GCA)B	72 nt		4.12	□□□□□ -1.75
SHP1	P34223	tC(GCA)G	tC(GCA)G	72 nt		4.12	□□□□□ -1.75
SHP1	P34223	tC(GCA)P1	tC(GCA)P1	72 nt		4.12	□□□□□ -1.75
SHP1	P34223	tC(GCA)P2	tC(GCA)P2	72 nt		4.12	□□□□□ -1.75
SHP1	P34223	tR(UCU)Q1	tR(UCU)Q1	73 nt		4.12	□□□□□ -1.75
SHP1	P34223	GTT1	YIR038C	705 nt		4.12	□□□□□ -1.75
SHP1	P34223	PIR3	YKL163W	978 nt		4.12	□□□□□ -1.75
SHP1	P34223	MTD1	YKR080W	963 nt		4.12	□□□□□ -1.75
SHP1	P34223	YLR042C	YLR042C	486 nt		4.12	□□□□□ -1.75
SHP1	P34223	RNA1	YMR235C	1224 nt		4.12	□□□□□ -1.75
SHP1	P34223	ATG8	YBL078C	354 nt		4.12	□□□□□ -1.75
SHP1	P34223	NCR1	YPL006W	3513 nt		4.12	□□□□□ -1.75
SHP1	P34223	IKS1	YJL057C	2004 nt		4.12	□□□□□ -1.75
SHP1	P34223	TCB3	YML072C	4638 nt		4.12	□□□□□ -1.75
SHP1	P34223	IDS2	YJL146W	1410 nt		4.12	□□□□□ -1.75
SHP1	P34223	RAD4	YER162C	2265 nt		4.11	□□□□□ -1.75
SHP1	P34223	YGR269W	YGR269W	327 nt		4.11	□□□□□ -1.75
SHP1	P34223	FSH1	YHR049W	732 nt		4.11	□□□□□ -1.75

Retrieved 100 of 7,029 protein–RNA pairs in 19.8 ms