Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.15■□□□□ 0.66
COL8A1P27658 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL8A1P27658 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL8A1P27658 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.14■□□□□ 0.65
COL8A1P27658 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL8A1P27658 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL8A1P27658 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.14■□□□□ 0.65
COL8A1P27658 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL8A1P27658 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.14■□□□□ 0.65
COL8A1P27658 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
COL8A1P27658 RPS2P4-201ENST00000476944 856 ntBASIC19.14■□□□□ 0.65
COL8A1P27658 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.14■□□□□ 0.65
COL8A1P27658 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL8A1P27658 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.14■□□□□ 0.65
COL8A1P27658 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL8A1P27658 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.14■□□□□ 0.65
COL8A1P27658 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL8A1P27658 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.14■□□□□ 0.65
COL8A1P27658 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL8A1P27658 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
COL8A1P27658 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL8A1P27658 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL8A1P27658 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL8A1P27658 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL8A1P27658 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
COL8A1P27658 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.13■□□□□ 0.65
COL8A1P27658 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.13■□□□□ 0.65
COL8A1P27658 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.13■□□□□ 0.65
COL8A1P27658 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL8A1P27658 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.13■□□□□ 0.65
COL8A1P27658 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL8A1P27658 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.13■□□□□ 0.65
COL8A1P27658 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL8A1P27658 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.13■□□□□ 0.65
COL8A1P27658 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL8A1P27658 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL8A1P27658 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL8A1P27658 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL8A1P27658 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL8A1P27658 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL8A1P27658 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL8A1P27658 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.12■□□□□ 0.65
COL8A1P27658 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.12■□□□□ 0.65
COL8A1P27658 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL8A1P27658 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.12■□□□□ 0.65
COL8A1P27658 GCSHP5-201ENST00000443090 522 ntBASIC19.12■□□□□ 0.65
COL8A1P27658 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL8A1P27658 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL8A1P27658 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.12■□□□□ 0.65
COL8A1P27658 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.11■□□□□ 0.65
COL8A1P27658 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 FP325331.1-202ENST00000623531 1380 ntBASIC19.11■□□□□ 0.65
COL8A1P27658 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.11■□□□□ 0.65
COL8A1P27658 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
COL8A1P27658 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
COL8A1P27658 HLA-L-211ENST00000482052 1765 ntBASIC19.11■□□□□ 0.65
COL8A1P27658 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL8A1P27658 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 AL161729.1-201ENST00000604104 1402 ntBASIC19.1■□□□□ 0.65
COL8A1P27658 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
COL8A1P27658 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.1■□□□□ 0.65
COL8A1P27658 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.1■□□□□ 0.65
COL8A1P27658 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.1■□□□□ 0.65
COL8A1P27658 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.1■□□□□ 0.65
COL8A1P27658 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.1■□□□□ 0.65
COL8A1P27658 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL8A1P27658 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.1■□□□□ 0.65
COL8A1P27658 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL8A1P27658 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL8A1P27658 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL8A1P27658 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.09■□□□□ 0.65
COL8A1P27658 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.09■□□□□ 0.65
COL8A1P27658 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.09■□□□□ 0.65
COL8A1P27658 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL8A1P27658 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL8A1P27658 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.09■□□□□ 0.65
COL8A1P27658 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL8A1P27658 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.08■□□□□ 0.64
COL8A1P27658 MIR1224-201ENST00000408193 85 ntBASIC19.08■□□□□ 0.64
COL8A1P27658 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.08■□□□□ 0.64
COL8A1P27658 RARRES2P4-201ENST00000514074 484 ntBASIC19.08■□□□□ 0.64
COL8A1P27658 MIR4758-201ENST00000577688 71 ntBASIC19.08■□□□□ 0.64
COL8A1P27658 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.07■□□□□ 0.64
COL8A1P27658 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL8A1P27658 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms