Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMS3P0CW19 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMS3P0CW19 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMS3P0CW19 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMS3P0CW19 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMS3P0CW19 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMS3P0CW19 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMS3P0CW19 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
LIMS3P0CW19 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMS3P0CW19 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIMS3P0CW19 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMS3P0CW19 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMS3P0CW19 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.4■□□□□ 0.7
LIMS3P0CW19 DUX4L4-201ENST00000566884 1269 ntBASIC19.4■□□□□ 0.7
LIMS3P0CW19 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.4■□□□□ 0.7
LIMS3P0CW19 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LIMS3P0CW19 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LIMS3P0CW19 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMS3P0CW19 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMS3P0CW19 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.39■□□□□ 0.7
LIMS3P0CW19 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.39■□□□□ 0.7
LIMS3P0CW19 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
LIMS3P0CW19 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMS3P0CW19 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMS3P0CW19 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMS3P0CW19 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMS3P0CW19 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIMS3P0CW19 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
LIMS3P0CW19 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIMS3P0CW19 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIMS3P0CW19 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMS3P0CW19 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMS3P0CW19 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMS3P0CW19 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMS3P0CW19 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.38■□□□□ 0.69
LIMS3P0CW19 HSD17B1P1-201ENST00000590052 955 ntBASIC19.38■□□□□ 0.69
LIMS3P0CW19 Z98882.1-201ENST00000622160 2253 ntBASIC19.38■□□□□ 0.69
LIMS3P0CW19 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMS3P0CW19 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMS3P0CW19 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMS3P0CW19 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
LIMS3P0CW19 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMS3P0CW19 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIMS3P0CW19 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMS3P0CW19 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMS3P0CW19 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMS3P0CW19 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMS3P0CW19 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LIMS3P0CW19 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMS3P0CW19 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMS3P0CW19 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMS3P0CW19 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMS3P0CW19 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
LIMS3P0CW19 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.36■□□□□ 0.69
LIMS3P0CW19 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 PKD1P6-201ENST00000343738 4769 ntBASIC19.36■□□□□ 0.69
LIMS3P0CW19 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMS3P0CW19 AC010980.1-201ENST00000587192 1142 ntBASIC19.36■□□□□ 0.69
LIMS3P0CW19 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMS3P0CW19 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMS3P0CW19 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LIMS3P0CW19 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMS3P0CW19 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMS3P0CW19 AC005703.6-201ENST00000623265 1329 ntBASIC19.35■□□□□ 0.69
LIMS3P0CW19 AF106564.1-201ENST00000607058 2553 ntBASIC19.35■□□□□ 0.69
LIMS3P0CW19 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.35■□□□□ 0.69
LIMS3P0CW19 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
LIMS3P0CW19 NTF6A-201ENST00000591175 560 ntBASIC19.35■□□□□ 0.69
LIMS3P0CW19 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMS3P0CW19 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMS3P0CW19 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMS3P0CW19 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMS3P0CW19 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMS3P0CW19 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMS3P0CW19 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMS3P0CW19 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.34■□□□□ 0.69
LIMS3P0CW19 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMS3P0CW19 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms