Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RAF1P04049 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RAF1P04049 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RAF1P04049 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RAF1P04049 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RAF1P04049 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RAF1P04049 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAF1P04049 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAF1P04049 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAF1P04049 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.65■□□□□ 0.74
RAF1P04049 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.65■□□□□ 0.74
RAF1P04049 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.65■□□□□ 0.74
RAF1P04049 AC008764.7-201ENST00000593779 1081 ntBASIC19.65■□□□□ 0.74
RAF1P04049 AC011298.3-201ENST00000615796 283 ntBASIC19.65■□□□□ 0.74
RAF1P04049 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.65■□□□□ 0.74
RAF1P04049 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.65■□□□□ 0.74
RAF1P04049 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAF1P04049 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.65■□□□□ 0.74
RAF1P04049 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAF1P04049 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RAF1P04049 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RAF1P04049 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.64■□□□□ 0.73
RAF1P04049 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.64■□□□□ 0.73
RAF1P04049 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.64■□□□□ 0.73
RAF1P04049 AC131274.2-201ENST00000580697 1507 ntBASIC19.64■□□□□ 0.73
RAF1P04049 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RAF1P04049 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.64■□□□□ 0.73
RAF1P04049 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.64■□□□□ 0.73
RAF1P04049 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RAF1P04049 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RAF1P04049 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.63■□□□□ 0.73
RAF1P04049 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.63■□□□□ 0.73
RAF1P04049 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RAF1P04049 AC099791.2-201ENST00000605725 427 ntBASIC19.63■□□□□ 0.73
RAF1P04049 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAF1P04049 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAF1P04049 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.63■□□□□ 0.73
RAF1P04049 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAF1P04049 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAF1P04049 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.62■□□□□ 0.73
RAF1P04049 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
RAF1P04049 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.62■□□□□ 0.73
RAF1P04049 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
RAF1P04049 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.62■□□□□ 0.73
RAF1P04049 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
RAF1P04049 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAF1P04049 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
RAF1P04049 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.61■□□□□ 0.73
RAF1P04049 AC099791.1-201ENST00000416440 715 ntBASIC19.61■□□□□ 0.73
RAF1P04049 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.61■□□□□ 0.73
RAF1P04049 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.61■□□□□ 0.73
RAF1P04049 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.61■□□□□ 0.73
RAF1P04049 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.61■□□□□ 0.73
RAF1P04049 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RAF1P04049 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RAF1P04049 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
RAF1P04049 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
RAF1P04049 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.6■□□□□ 0.73
RAF1P04049 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.6■□□□□ 0.73
RAF1P04049 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RAF1P04049 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RAF1P04049 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.59■□□□□ 0.73
RAF1P04049 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
RAF1P04049 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms