Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC26.55■■□□□ 1.84
COL1A1P02452 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC26.55■■□□□ 1.84
COL1A1P02452 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL1A1P02452 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL1A1P02452 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL1A1P02452 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC26.54■■□□□ 1.84
COL1A1P02452 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC26.54■■□□□ 1.84
COL1A1P02452 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL1A1P02452 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC26.54■■□□□ 1.84
COL1A1P02452 RAP2CP1-201ENST00000605103 478 ntBASIC26.54■■□□□ 1.84
COL1A1P02452 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC26.54■■□□□ 1.84
COL1A1P02452 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.54■■□□□ 1.84
COL1A1P02452 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.53■■□□□ 1.84
COL1A1P02452 USP45-205ENST00000472914 1617 ntTSL 5 BASIC26.53■■□□□ 1.84
COL1A1P02452 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL1A1P02452 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL1A1P02452 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.53■■□□□ 1.84
COL1A1P02452 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
COL1A1P02452 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL1A1P02452 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL1A1P02452 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL1A1P02452 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC26.52■■□□□ 1.84
COL1A1P02452 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC26.52■■□□□ 1.84
COL1A1P02452 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC26.52■■□□□ 1.84
COL1A1P02452 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC26.52■■□□□ 1.84
COL1A1P02452 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL1A1P02452 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
COL1A1P02452 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC26.51■■□□□ 1.84
COL1A1P02452 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
COL1A1P02452 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC26.51■■□□□ 1.83
COL1A1P02452 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL1A1P02452 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL1A1P02452 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC26.5■■□□□ 1.83
COL1A1P02452 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC26.5■■□□□ 1.83
COL1A1P02452 AC087239.1-201ENST00000622671 572 ntBASIC26.5■■□□□ 1.83
COL1A1P02452 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC26.5■■□□□ 1.83
COL1A1P02452 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
COL1A1P02452 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC26.5■■□□□ 1.83
COL1A1P02452 GAS2L1P2-201ENST00000436355 1356 ntBASIC26.5■■□□□ 1.83
COL1A1P02452 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL1A1P02452 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL1A1P02452 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC26.49■■□□□ 1.83
COL1A1P02452 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC26.49■■□□□ 1.83
COL1A1P02452 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC26.49■■□□□ 1.83
COL1A1P02452 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC26.49■■□□□ 1.83
COL1A1P02452 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC26.49■■□□□ 1.83
COL1A1P02452 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL1A1P02452 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL1A1P02452 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL1A1P02452 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC26.49■■□□□ 1.83
COL1A1P02452 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL1A1P02452 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL1A1P02452 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
COL1A1P02452 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL1A1P02452 OXCT2P1-201ENST00000447263 1535 ntBASIC26.49■■□□□ 1.83
COL1A1P02452 BX005040.4-201ENST00000637145 1518 ntBASIC26.49■■□□□ 1.83
COL1A1P02452 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
COL1A1P02452 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC26.49■■□□□ 1.83
COL1A1P02452 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC26.49■■□□□ 1.83
COL1A1P02452 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC26.49■■□□□ 1.83
COL1A1P02452 TK2-208ENST00000545043 1120 ntTSL 2 BASIC26.49■■□□□ 1.83
COL1A1P02452 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL1A1P02452 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL1A1P02452 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC26.48■■□□□ 1.83
COL1A1P02452 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC26.48■■□□□ 1.83
COL1A1P02452 AC080038.1-201ENST00000611274 1154 ntBASIC26.48■■□□□ 1.83
COL1A1P02452 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL1A1P02452 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
COL1A1P02452 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
COL1A1P02452 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC26.47■■□□□ 1.83
COL1A1P02452 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
COL1A1P02452 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC26.47■■□□□ 1.83
COL1A1P02452 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL1A1P02452 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
COL1A1P02452 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
COL1A1P02452 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL1A1P02452 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
COL1A1P02452 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
COL1A1P02452 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC26.46■■□□□ 1.83
COL1A1P02452 AC073111.5-205ENST00000641717 521 ntBASIC26.46■■□□□ 1.83
COL1A1P02452 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL1A1P02452 LINC01960-201ENST00000563759 1884 ntBASIC26.46■■□□□ 1.83
COL1A1P02452 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
COL1A1P02452 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 AC016769.1-201ENST00000409132 1010 ntBASIC26.45■■□□□ 1.82
COL1A1P02452 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC26.45■■□□□ 1.82
COL1A1P02452 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 GALNS-213ENST00000569433 723 ntTSL 3 BASIC26.45■■□□□ 1.82
COL1A1P02452 AC004854.2-201ENST00000608450 1441 ntBASIC26.45■■□□□ 1.82
COL1A1P02452 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
COL1A1P02452 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL1A1P02452 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC26.45■■□□□ 1.82
COL1A1P02452 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC26.45■■□□□ 1.82
COL1A1P02452 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC26.45■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms