Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.74■□□□□ 0.91
CPSF4O95639 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.74■□□□□ 0.91
CPSF4O95639 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.74■□□□□ 0.91
CPSF4O95639 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 AC007375.3-201ENST00000600936 2314 ntBASIC20.73■□□□□ 0.91
CPSF4O95639 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.73■□□□□ 0.91
CPSF4O95639 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 FBXW4P1-201ENST00000426721 2239 ntBASIC20.73■□□□□ 0.91
CPSF4O95639 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.73■□□□□ 0.91
CPSF4O95639 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CPSF4O95639 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 C17orf82-201ENST00000623772 1530 ntBASIC20.73■□□□□ 0.91
CPSF4O95639 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.73■□□□□ 0.91
CPSF4O95639 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4O95639 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CPSF4O95639 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.72■□□□□ 0.91
CPSF4O95639 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CPSF4O95639 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.72■□□□□ 0.91
CPSF4O95639 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CPSF4O95639 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.72■□□□□ 0.91
CPSF4O95639 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CPSF4O95639 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CPSF4O95639 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CPSF4O95639 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CPSF4O95639 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4O95639 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4O95639 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4O95639 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.71■□□□□ 0.91
CPSF4O95639 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.71■□□□□ 0.91
CPSF4O95639 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4O95639 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4O95639 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.71■□□□□ 0.91
CPSF4O95639 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4O95639 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.7■□□□□ 0.91
CPSF4O95639 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.7■□□□□ 0.91
CPSF4O95639 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4O95639 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4O95639 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.7■□□□□ 0.9
CPSF4O95639 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4O95639 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.7■□□□□ 0.9
CPSF4O95639 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4O95639 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.7■□□□□ 0.9
CPSF4O95639 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4O95639 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4O95639 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.7■□□□□ 0.9
CPSF4O95639 UNC93B8-201ENST00000511903 705 ntBASIC20.7■□□□□ 0.9
CPSF4O95639 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CPSF4O95639 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
CPSF4O95639 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4O95639 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.7■□□□□ 0.9
CPSF4O95639 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CPSF4O95639 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CPSF4O95639 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CPSF4O95639 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CPSF4O95639 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4O95639 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4O95639 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4O95639 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4O95639 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4O95639 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.68■□□□□ 0.9
CPSF4O95639 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4O95639 MIR6724-1-201ENST00000616420 92 ntBASIC20.68■□□□□ 0.9
CPSF4O95639 MIR6724-2-201ENST00000616483 92 ntBASIC20.68■□□□□ 0.9
CPSF4O95639 MIR6724-4-201ENST00000617390 92 ntBASIC20.68■□□□□ 0.9
CPSF4O95639 MIR6724-3-201ENST00000622482 92 ntBASIC20.68■□□□□ 0.9
CPSF4O95639 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CPSF4O95639 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.68■□□□□ 0.9
CPSF4O95639 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CPSF4O95639 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4O95639 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4O95639 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4O95639 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4O95639 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4O95639 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4O95639 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.67■□□□□ 0.9
CPSF4O95639 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4O95639 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4O95639 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4O95639 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms