Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC38.42■■■■□ 3.74
CCDC88BA6NC98 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC38.42■■■■□ 3.74
CCDC88BA6NC98 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC38.42■■■■□ 3.74
CCDC88BA6NC98 AC005224.4-201ENST00000583262 1652 ntBASIC38.41■■■■□ 3.74
CCDC88BA6NC98 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC38.41■■■■□ 3.74
CCDC88BA6NC98 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC38.4■■■■□ 3.74
CCDC88BA6NC98 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC38.4■■■■□ 3.74
CCDC88BA6NC98 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC38.4■■■■□ 3.74
CCDC88BA6NC98 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC38.4■■■■□ 3.74
CCDC88BA6NC98 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 USP45-205ENST00000472914 1617 ntTSL 5 BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC38.39■■■■□ 3.74
CCDC88BA6NC98 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC38.38■■■■□ 3.73
CCDC88BA6NC98 DUSP8P3-201ENST00000399571 1760 ntBASIC38.37■■■■□ 3.73
CCDC88BA6NC98 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC38.37■■■■□ 3.73
CCDC88BA6NC98 AC104187.1-201ENST00000607510 612 ntBASIC38.37■■■■□ 3.73
CCDC88BA6NC98 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC38.37■■■■□ 3.73
CCDC88BA6NC98 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC38.37■■■■□ 3.73
CCDC88BA6NC98 KRT87P-202ENST00000534226 1464 ntBASIC38.37■■■■□ 3.73
CCDC88BA6NC98 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC38.37■■■■□ 3.73
CCDC88BA6NC98 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC38.37■■■■□ 3.73
CCDC88BA6NC98 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
CCDC88BA6NC98 SLC7A5P2-201ENST00000553010 536 ntBASIC38.36■■■■□ 3.73
CCDC88BA6NC98 MAZ-216ENST00000616501 991 ntTSL 5 BASIC38.36■■■■□ 3.73
CCDC88BA6NC98 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC38.36■■■■□ 3.73
CCDC88BA6NC98 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC38.36■■■■□ 3.73
CCDC88BA6NC98 LINC01124-201ENST00000409786 2117 ntBASIC38.36■■■■□ 3.73
CCDC88BA6NC98 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC38.35■■■■□ 3.73
CCDC88BA6NC98 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
CCDC88BA6NC98 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC38.35■■■■□ 3.73
CCDC88BA6NC98 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
CCDC88BA6NC98 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC38.35■■■■□ 3.73
CCDC88BA6NC98 DUX4L16-201ENST00000555130 1264 ntBASIC38.35■■■■□ 3.73
CCDC88BA6NC98 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
CCDC88BA6NC98 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
CCDC88BA6NC98 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC38.35■■■■□ 3.73
CCDC88BA6NC98 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC38.34■■■■□ 3.73
CCDC88BA6NC98 GPX1P1-201ENST00000388829 606 ntBASIC38.34■■■■□ 3.73
CCDC88BA6NC98 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC38.34■■■■□ 3.73
CCDC88BA6NC98 UBE2DNL-204ENST00000602536 740 ntBASIC38.34■■■■□ 3.73
CCDC88BA6NC98 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC38.33■■■■□ 3.73
CCDC88BA6NC98 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
CCDC88BA6NC98 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC38.33■■■■□ 3.73
CCDC88BA6NC98 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC38.33■■■■□ 3.73
CCDC88BA6NC98 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC38.33■■■■□ 3.73
CCDC88BA6NC98 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC38.33■■■■□ 3.73
CCDC88BA6NC98 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
CCDC88BA6NC98 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
CCDC88BA6NC98 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC38.32■■■■□ 3.73
CCDC88BA6NC98 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC38.32■■■■□ 3.73
CCDC88BA6NC98 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC38.32■■■■□ 3.72
CCDC88BA6NC98 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC38.32■■■■□ 3.72
CCDC88BA6NC98 AL139125.2-201ENST00000623134 1869 ntBASIC38.32■■■■□ 3.72
CCDC88BA6NC98 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC38.31■■■■□ 3.72
CCDC88BA6NC98 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC38.31■■■■□ 3.72
CCDC88BA6NC98 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC38.31■■■■□ 3.72
CCDC88BA6NC98 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC38.31■■■■□ 3.72
CCDC88BA6NC98 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC38.31■■■■□ 3.72
CCDC88BA6NC98 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC38.3■■■■□ 3.72
CCDC88BA6NC98 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC38.3■■■■□ 3.72
CCDC88BA6NC98 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 MDK-213ENST00000617138 635 ntTSL 2 BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 TFG-210ENST00000620299 1289 ntTSL 5 BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC38.29■■■■□ 3.72
CCDC88BA6NC98 METTL15-202ENST00000403099 795 ntTSL 5 BASIC38.28■■■■□ 3.72
CCDC88BA6NC98 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC38.28■■■■□ 3.72
CCDC88BA6NC98 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC38.28■■■■□ 3.72
CCDC88BA6NC98 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC38.28■■■■□ 3.72
CCDC88BA6NC98 APTR-205ENST00000447009 902 ntTSL 2 BASIC38.28■■■■□ 3.72
CCDC88BA6NC98 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC38.28■■■■□ 3.72
CCDC88BA6NC98 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
CCDC88BA6NC98 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC38.27■■■■□ 3.72
CCDC88BA6NC98 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC38.27■■■■□ 3.72
CCDC88BA6NC98 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
CCDC88BA6NC98 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
CCDC88BA6NC98 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC38.27■■■■□ 3.72
CCDC88BA6NC98 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC38.27■■■■□ 3.72
CCDC88BA6NC98 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC38.27■■■■□ 3.72
CCDC88BA6NC98 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC38.26■■■■□ 3.72
CCDC88BA6NC98 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC38.26■■■■□ 3.72
CCDC88BA6NC98 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC38.26■■■■□ 3.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms