Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SMIM28A0A1B0GU29 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SMIM28A0A1B0GU29 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.54■■□□□ 1.36
SMIM28A0A1B0GU29 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SMIM28A0A1B0GU29 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
SMIM28A0A1B0GU29 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.54■■□□□ 1.36
SMIM28A0A1B0GU29 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 KRT18P5-201ENST00000436075 1291 ntBASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 KRT18P14-201ENST00000534205 1250 ntBASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 TPRG1LP1-201ENST00000598702 760 ntBASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 BX005040.4-201ENST00000637145 1518 ntBASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.53■■□□□ 1.36
SMIM28A0A1B0GU29 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMIM28A0A1B0GU29 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.51■■□□□ 1.35
SMIM28A0A1B0GU29 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
SMIM28A0A1B0GU29 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.5■■□□□ 1.35
SMIM28A0A1B0GU29 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
SMIM28A0A1B0GU29 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC23.5■■□□□ 1.35
SMIM28A0A1B0GU29 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
SMIM28A0A1B0GU29 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.5■■□□□ 1.35
SMIM28A0A1B0GU29 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.5■■□□□ 1.35
SMIM28A0A1B0GU29 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
SMIM28A0A1B0GU29 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMIM28A0A1B0GU29 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
SMIM28A0A1B0GU29 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.49■■□□□ 1.35
SMIM28A0A1B0GU29 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMIM28A0A1B0GU29 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.49■■□□□ 1.35
SMIM28A0A1B0GU29 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SMIM28A0A1B0GU29 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMIM28A0A1B0GU29 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMIM28A0A1B0GU29 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SMIM28A0A1B0GU29 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
SMIM28A0A1B0GU29 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SMIM28A0A1B0GU29 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.47■■□□□ 1.35
SMIM28A0A1B0GU29 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
SMIM28A0A1B0GU29 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SMIM28A0A1B0GU29 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.47■■□□□ 1.35
SMIM28A0A1B0GU29 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms