Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 CPT2-209ENST00000636935 803 ntTSL 5 BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC30.28■■■□□ 2.44
CCDC61Q9Y6R9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC30.28■■■□□ 2.44
CCDC61Q9Y6R9 ABCB10P4-201ENST00000566803 2184 ntBASIC30.28■■■□□ 2.44
CCDC61Q9Y6R9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC30.28■■■□□ 2.44
CCDC61Q9Y6R9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC61Q9Y6R9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC61Q9Y6R9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC61Q9Y6R9 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC30.27■■■□□ 2.44
CCDC61Q9Y6R9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC30.27■■■□□ 2.44
CCDC61Q9Y6R9 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC61Q9Y6R9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CCDC61Q9Y6R9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CCDC61Q9Y6R9 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CCDC61Q9Y6R9 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CCDC61Q9Y6R9 KRT19P1-201ENST00000405746 1186 ntBASIC30.26■■■□□ 2.43
CCDC61Q9Y6R9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
CCDC61Q9Y6R9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC30.26■■■□□ 2.43
CCDC61Q9Y6R9 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
CCDC61Q9Y6R9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC61Q9Y6R9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC30.25■■■□□ 2.43
CCDC61Q9Y6R9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC30.25■■■□□ 2.43
CCDC61Q9Y6R9 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC61Q9Y6R9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC61Q9Y6R9 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC30.25■■■□□ 2.43
CCDC61Q9Y6R9 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC61Q9Y6R9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC61Q9Y6R9 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC30.24■■■□□ 2.43
CCDC61Q9Y6R9 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC30.24■■■□□ 2.43
CCDC61Q9Y6R9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
CCDC61Q9Y6R9 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC30.24■■■□□ 2.43
CCDC61Q9Y6R9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC30.24■■■□□ 2.43
CCDC61Q9Y6R9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC61Q9Y6R9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC61Q9Y6R9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC30.23■■■□□ 2.43
CCDC61Q9Y6R9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC30.23■■■□□ 2.43
CCDC61Q9Y6R9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC61Q9Y6R9 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC30.23■■■□□ 2.43
CCDC61Q9Y6R9 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC61Q9Y6R9 BID-214ENST00000617586 542 ntTSL 5 BASIC30.23■■■□□ 2.43
CCDC61Q9Y6R9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC61Q9Y6R9 AC026185.1-201ENST00000445748 174 ntBASIC30.22■■■□□ 2.43
CCDC61Q9Y6R9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC30.22■■■□□ 2.43
CCDC61Q9Y6R9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC30.22■■■□□ 2.43
CCDC61Q9Y6R9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC61Q9Y6R9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC61Q9Y6R9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC61Q9Y6R9 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC30.21■■■□□ 2.43
CCDC61Q9Y6R9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC61Q9Y6R9 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC61Q9Y6R9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC30.21■■■□□ 2.43
CCDC61Q9Y6R9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC61Q9Y6R9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
CCDC61Q9Y6R9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC61Q9Y6R9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
CCDC61Q9Y6R9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
CCDC61Q9Y6R9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC30.2■■■□□ 2.43
CCDC61Q9Y6R9 GXYLT1P5-201ENST00000614548 1189 ntBASIC30.2■■■□□ 2.43
CCDC61Q9Y6R9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.43
CCDC61Q9Y6R9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC30.2■■■□□ 2.42
CCDC61Q9Y6R9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
CCDC61Q9Y6R9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 DUSP8P3-201ENST00000399571 1760 ntBASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 TESC-206ENST00000541210 936 ntTSL 3 BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC30.19■■■□□ 2.42
CCDC61Q9Y6R9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC61Q9Y6R9 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 PPP1R14BP3-201ENST00000509033 445 ntBASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms