Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 MFSD11-216ENST00000590393 1141 ntBASIC19.91■□□□□ 0.78
SHANK1Q9Y566 AL050303.2-201ENST00000619798 666 ntBASIC19.91■□□□□ 0.78
SHANK1Q9Y566 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 KRT18P11-201ENST00000435214 1283 ntBASIC19.9■□□□□ 0.78
SHANK1Q9Y566 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 DUX4L4-201ENST00000566884 1269 ntBASIC19.9■□□□□ 0.78
SHANK1Q9Y566 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SHANK1Q9Y566 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
SHANK1Q9Y566 BX005040.4-201ENST00000637145 1518 ntBASIC19.89■□□□□ 0.78
SHANK1Q9Y566 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK1Q9Y566 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK1Q9Y566 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SHANK1Q9Y566 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK1Q9Y566 AC144652.1-201ENST00000609974 1624 ntBASIC19.89■□□□□ 0.77
SHANK1Q9Y566 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
SHANK1Q9Y566 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK1Q9Y566 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK1Q9Y566 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK1Q9Y566 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK1Q9Y566 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SHANK1Q9Y566 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK1Q9Y566 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK1Q9Y566 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK1Q9Y566 TSPY20P-201ENST00000450910 630 ntBASIC19.88■□□□□ 0.77
SHANK1Q9Y566 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK1Q9Y566 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.88■□□□□ 0.77
SHANK1Q9Y566 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 GUSBP6-202ENST00000438529 1198 ntBASIC19.87■□□□□ 0.77
SHANK1Q9Y566 AL139125.2-201ENST00000623134 1869 ntBASIC19.87■□□□□ 0.77
SHANK1Q9Y566 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 CD99P1-205ENST00000527459 561 ntBASIC19.87■□□□□ 0.77
SHANK1Q9Y566 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 MIR4651-201ENST00000582622 73 ntBASIC19.87■□□□□ 0.77
SHANK1Q9Y566 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.87■□□□□ 0.77
SHANK1Q9Y566 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SHANK1Q9Y566 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 SLC7A5P2-201ENST00000553010 536 ntBASIC19.85■□□□□ 0.77
SHANK1Q9Y566 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHANK1Q9Y566 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms