Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 CA15P2-201ENST00000611168 834 ntBASIC19.52■□□□□ 0.72
VSX1Q9NZR4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.52■□□□□ 0.72
VSX1Q9NZR4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VSX1Q9NZR4 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
VSX1Q9NZR4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.52■□□□□ 0.71
VSX1Q9NZR4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.52■□□□□ 0.71
VSX1Q9NZR4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.52■□□□□ 0.71
VSX1Q9NZR4 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.52■□□□□ 0.71
VSX1Q9NZR4 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VSX1Q9NZR4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.51■□□□□ 0.71
VSX1Q9NZR4 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 AL356740.2-201ENST00000601559 647 ntBASIC19.51■□□□□ 0.71
VSX1Q9NZR4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 AC137767.1-201ENST00000602918 1920 ntBASIC19.51■□□□□ 0.71
VSX1Q9NZR4 C11orf96-202ENST00000528572 1834 ntBASIC19.51■□□□□ 0.71
VSX1Q9NZR4 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VSX1Q9NZR4 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 MIR3621-201ENST00000580529 85 ntBASIC19.5■□□□□ 0.71
VSX1Q9NZR4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VSX1Q9NZR4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VSX1Q9NZR4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.48■□□□□ 0.71
VSX1Q9NZR4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.47■□□□□ 0.71
VSX1Q9NZR4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms