Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 MIR4508-201ENST00000584178 70 ntBASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP1AQ9HD42 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 AC138932.1-201ENST00000534164 6830 ntBASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 AL033527.3-201ENST00000566366 1196 ntBASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CHMP1AQ9HD42 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 RNF165-205ENST00000588679 2904 ntBASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP1AQ9HD42 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CHMP1AQ9HD42 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 SNX5-217ENST00000606557 1087 ntBASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP1AQ9HD42 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms