Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS13AQ96RL7 KRT87P-202ENST00000534226 1464 ntBASIC21.96■■□□□ 1.11
VPS13AQ96RL7 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
VPS13AQ96RL7 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
VPS13AQ96RL7 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.95■■□□□ 1.11
VPS13AQ96RL7 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.95■■□□□ 1.1
VPS13AQ96RL7 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 MIR1224-201ENST00000408193 85 ntBASIC21.94■■□□□ 1.1
VPS13AQ96RL7 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 AC105036.2-201ENST00000569468 176 ntBASIC21.94■■□□□ 1.1
VPS13AQ96RL7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 AC104187.1-201ENST00000607510 612 ntBASIC21.94■■□□□ 1.1
VPS13AQ96RL7 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VPS13AQ96RL7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 RNA5SP413-201ENST00000516373 109 ntBASIC21.93■■□□□ 1.1
VPS13AQ96RL7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 AC133041.1-202ENST00000642053 222 ntBASIC21.93■■□□□ 1.1
VPS13AQ96RL7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS13AQ96RL7 AC133552.2-202ENST00000575694 574 ntBASIC21.93■■□□□ 1.1
VPS13AQ96RL7 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 AL158047.1-201ENST00000445918 881 ntBASIC21.92■■□□□ 1.1
VPS13AQ96RL7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 AC144652.1-201ENST00000609974 1624 ntBASIC21.92■■□□□ 1.1
VPS13AQ96RL7 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS13AQ96RL7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS13AQ96RL7 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.91■■□□□ 1.1
VPS13AQ96RL7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.91■■□□□ 1.1
VPS13AQ96RL7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS13AQ96RL7 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.91■■□□□ 1.1
VPS13AQ96RL7 AC211429.1-201ENST00000415277 523 ntBASIC21.91■■□□□ 1.1
VPS13AQ96RL7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
VPS13AQ96RL7 UNC93B4-201ENST00000505679 747 ntBASIC21.91■■□□□ 1.1
VPS13AQ96RL7 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
VPS13AQ96RL7 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS13AQ96RL7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.9■■□□□ 1.1
VPS13AQ96RL7 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS13AQ96RL7 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms