Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 ZNRF2P3-201ENST00000424200 374 ntBASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
PTCHD1Q96NR3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 AP005435.1-201ENST00000529293 1178 ntBASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD1Q96NR3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 TSPY26P-201ENST00000476365 1326 ntBASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.61■□□□□ 0.89
PTCHD1Q96NR3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 AC068587.7-201ENST00000641602 218 ntBASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD1Q96NR3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 IGHV3-19-201ENST00000521488 291 ntBASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD1Q96NR3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.58■□□□□ 0.89
PTCHD1Q96NR3 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
PTCHD1Q96NR3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTCHD1Q96NR3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.58■□□□□ 0.88
PTCHD1Q96NR3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 AC012676.1-201ENST00000574705 1949 ntBASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 IRS3P-201ENST00000223076 1006 ntBASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 AL031602.1-201ENST00000633169 911 ntBASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
PTCHD1Q96NR3 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms