Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 THA1P-201ENST00000590384 1145 ntBASIC19.51■□□□□ 0.71
CCDC58Q4VC31 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC58Q4VC31 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC58Q4VC31 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC58Q4VC31 AC074183.2-201ENST00000623112 922 ntBASIC19.48■□□□□ 0.71
CCDC58Q4VC31 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC58Q4VC31 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 FBXW4P1-201ENST00000426721 2239 ntBASIC19.46■□□□□ 0.71
CCDC58Q4VC31 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC58Q4VC31 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC58Q4VC31 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC58Q4VC31 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms