Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.39■■□□□ 1.65
CCDC144BQ3MJ40 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
CCDC144BQ3MJ40 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.39■■□□□ 1.65
CCDC144BQ3MJ40 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
CCDC144BQ3MJ40 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 AC022517.1-201ENST00000592429 346 ntBASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 IKBKGP1-201ENST00000612193 1073 ntBASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC144BQ3MJ40 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 ANOS2P-203ENST00000472227 1816 ntBASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 KRT18P5-201ENST00000436075 1291 ntBASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC144BQ3MJ40 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 IGHV3-19-201ENST00000521488 291 ntBASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 AC133637.1-201ENST00000624115 1537 ntBASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.36■■□□□ 1.65
CCDC144BQ3MJ40 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 DUX4L2-201ENST00000561772 1275 ntBASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 AL358852.1-201ENST00000623174 1268 ntBASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 DUX4L6-201ENST00000626483 1275 ntBASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 DUX4L1-201ENST00000627662 1275 ntBASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 DUX4L8-201ENST00000629013 1275 ntBASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 DUX4L3-201ENST00000630187 1275 ntBASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 DUX4L7-201ENST00000630678 1275 ntBASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 DUX4L5-201ENST00000630834 1275 ntBASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.35■■□□□ 1.65
CCDC144BQ3MJ40 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC144BQ3MJ40 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 MIR572-201ENST00000384983 95 ntBASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 AC027612.3-201ENST00000413684 1047 ntBASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms