Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 CCDC82-207ENST00000538597 849 ntAPPRIS ALT2 TSL 311.68□□□□□ -0.547e-6■■■□□ 18.7
U2AF1Q01081 PHF21A-208ENST00000527753 592 ntTSL 29.36□□□□□ -0.917e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-223ENST00000552013 679 ntTSL 28.95□□□□□ -0.987e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.097e-6■■■□□ 18.7
U2AF1Q01081 CHD1L-206ENST00000469625 423 ntTSL 58□□□□□ -1.137e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-212ENST00000547993 2481 ntTSL 1 (best)7.29□□□□□ -1.247e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC6.98□□□□□ -1.297e-6■■■□□ 18.7
U2AF1Q01081 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.94□□□□□ -1.37e-6■■■□□ 18.7
U2AF1Q01081 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC6.94□□□□□ -1.37e-6■■■□□ 18.7
U2AF1Q01081 TAF1D-214ENST00000530089 1429 ntTSL 36.27□□□□□ -1.417e-6■■■□□ 18.7
U2AF1Q01081 VPS54-204ENST00000416400 1277 ntTSL 1 (best)6.08□□□□□ -1.447e-6■■■□□ 18.7
U2AF1Q01081 FCHO2-205ENST00000508431 553 ntTSL 45.92□□□□□ -1.467e-6■■■□□ 18.7
U2AF1Q01081 PHF21A-221ENST00000534766 635 ntTSL 35.26□□□□□ -1.577e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-211ENST00000547969 543 ntTSL 45.11□□□□□ -1.597e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-225ENST00000552147 1009 ntTSL 54.98□□□□□ -1.617e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-224ENST00000552056 1981 ntTSL 54.95□□□□□ -1.627e-6■■■□□ 18.7
U2AF1Q01081 CCDC82-206ENST00000530203 236 ntAPPRIS ALT2 TSL 54.57□□□□□ -1.687e-6■■■□□ 18.7
U2AF1Q01081 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.757e-6■■■□□ 18.7
U2AF1Q01081 RIF1-212ENST00000498041 776 ntTSL 33.7□□□□□ -1.827e-6■■■□□ 18.7
U2AF1Q01081 ITCH-205ENST00000483727 1070 ntTSL 53.61□□□□□ -1.837e-6■■■□□ 18.7
U2AF1Q01081 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.97□□□□□ -1.937e-6■■■□□ 18.7
U2AF1Q01081 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.362e-9■■■□□ 18.7
U2AF1Q01081 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC21.98■■□□□ 1.112e-9■■■□□ 18.7
U2AF1Q01081 KIAA1324L-204ENST00000423294 2911 ntTSL 519.76■□□□□ 0.752e-9■■■□□ 18.7
U2AF1Q01081 KIAA1324L-201ENST00000394714 3073 ntTSL 510.35□□□□□ -0.752e-9■■■□□ 18.7
U2AF1Q01081 KIAA1324L-203ENST00000416314 3179 ntAPPRIS P3 TSL 2 BASIC9.55□□□□□ -0.882e-9■■■□□ 18.7
U2AF1Q01081 RBM3-201ENST00000354480 1884 ntTSL 2 BASIC16.71■□□□□ 0.275e-33■■■□□ 18.6
U2AF1Q01081 KIAA0907-209ENST00000483237 443 ntTSL 53.51□□□□□ -1.851e-6■■■□□ 18.6
U2AF1Q01081 SLC20A1-209ENST00000498224 692 ntTSL 213.91□□□□□ -0.189e-14■■■□□ 18.6
U2AF1Q01081 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -11e-10■■■□□ 18.6
U2AF1Q01081 INTS11-223ENST00000498173 1589 ntTSL 228.88■■■□□ 2.217e-8■■■□□ 18.6
U2AF1Q01081 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC28.03■■■□□ 2.087e-8■■■□□ 18.6
U2AF1Q01081 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC26.54■■□□□ 1.847e-8■■■□□ 18.6
U2AF1Q01081 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC26.28■■□□□ 1.87e-8■■■□□ 18.6
U2AF1Q01081 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.787e-8■■■□□ 18.6
U2AF1Q01081 INTS11-235ENST00000527719 750 ntTSL 525.8■■□□□ 1.727e-8■■■□□ 18.6
U2AF1Q01081 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC25.63■■□□□ 1.697e-8■■■□□ 18.6
U2AF1Q01081 INTS11-230ENST00000526332 579 ntTSL 425.23■■□□□ 1.637e-8■■■□□ 18.6
U2AF1Q01081 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC24.76■■□□□ 1.557e-8■■■□□ 18.6
U2AF1Q01081 INTS11-218ENST00000488042 1134 ntTSL 223.77■■□□□ 1.47e-8■■■□□ 18.6
U2AF1Q01081 INTS11-221ENST00000496353 2428 ntTSL 223.71■■□□□ 1.397e-8■■■□□ 18.6
U2AF1Q01081 INTS11-237ENST00000530031 800 ntTSL 523.4■■□□□ 1.347e-8■■■□□ 18.6
U2AF1Q01081 INTS11-207ENST00000434694 1056 ntTSL 523.3■■□□□ 1.327e-8■■■□□ 18.6
U2AF1Q01081 INTS11-232ENST00000526904 551 ntTSL 422.41■■□□□ 1.187e-8■■■□□ 18.6
U2AF1Q01081 INTS11-243ENST00000532772 1618 ntTSL 521.88■■□□□ 1.097e-8■■■□□ 18.6
U2AF1Q01081 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC21.24■□□□□ 0.997e-8■■■□□ 18.6
U2AF1Q01081 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC21.14■□□□□ 0.977e-8■■■□□ 18.6
U2AF1Q01081 INTS11-201ENST00000323275 2450 ntTSL 1 (best)20.7■□□□□ 0.97e-8■■■□□ 18.6
U2AF1Q01081 INTS11-236ENST00000528879 1524 ntTSL 520.17■□□□□ 0.827e-8■■■□□ 18.6
U2AF1Q01081 INTS11-206ENST00000430786 849 ntTSL 520.15■□□□□ 0.827e-8■■■□□ 18.6
U2AF1Q01081 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.77■□□□□ 0.767e-8■■■□□ 18.6
U2AF1Q01081 INTS11-210ENST00000458452 2571 ntTSL 219.63■□□□□ 0.737e-8■■■□□ 18.6
U2AF1Q01081 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC19.44■□□□□ 0.77e-8■■■□□ 18.6
U2AF1Q01081 INTS11-227ENST00000525603 738 ntTSL 319.33■□□□□ 0.687e-8■■■□□ 18.6
U2AF1Q01081 INTS11-233ENST00000527098 2004 ntTSL 218.96■□□□□ 0.637e-8■■■□□ 18.6
U2AF1Q01081 INTS11-229ENST00000526113 591 ntTSL 518.51■□□□□ 0.557e-8■■■□□ 18.6
U2AF1Q01081 INTS11-231ENST00000526797 659 ntTSL 416.42■□□□□ 0.227e-8■■■□□ 18.6
U2AF1Q01081 UBR4-205ENST00000417040 6175 ntTSL 515.15■□□□□ 0.027e-8■■■□□ 18.6
U2AF1Q01081 PPIA-210ENST00000620047 827 ntTSL 5 BASIC18.37■□□□□ 0.539e-7■■■□□ 18.5
U2AF1Q01081 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC18.37■□□□□ 0.539e-7■■■□□ 18.5
U2AF1Q01081 PPIA-208ENST00000489459 907 ntTSL 2 BASIC18.37■□□□□ 0.539e-7■■■□□ 18.5
U2AF1Q01081 PPIA-209ENST00000494484 2149 ntTSL 214.43□□□□□ -0.19e-7■■■□□ 18.5
U2AF1Q01081 PPIA-205ENST00000479021 552 ntTSL 413.87□□□□□ -0.199e-7■■■□□ 18.5
U2AF1Q01081 PPIA-202ENST00000415933 863 ntTSL 212.23□□□□□ -0.459e-7■■■□□ 18.5
U2AF1Q01081 PPIA-206ENST00000480603 842 ntTSL 311.3□□□□□ -0.69e-7■■■□□ 18.5
U2AF1Q01081 PPIA-204ENST00000468812 2238 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.769e-7■■■□□ 18.5
U2AF1Q01081 PPIA-203ENST00000451562 544 ntTSL 2 BASIC8.91□□□□□ -0.989e-7■■■□□ 18.5
U2AF1Q01081 USP15-213ENST00000549268 1087 ntTSL 56.72□□□□□ -1.332e-6■■■□□ 18.5
U2AF1Q01081 WNK2-214ENST00000474009 561 ntTSL 323.2■■□□□ 1.38e-10■■■□□ 18.5
U2AF1Q01081 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.298e-10■■■□□ 18.5
U2AF1Q01081 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.988e-10■■■□□ 18.5
U2AF1Q01081 WNK2-208ENST00000453718 1937 ntTSL 520.9■□□□□ 0.948e-10■■■□□ 18.5
U2AF1Q01081 WNK2-205ENST00000432730 7792 ntAPPRIS ALT2 TSL 1 (best)19.95■□□□□ 0.788e-10■■■□□ 18.5
U2AF1Q01081 WNK2-203ENST00000411624 6679 ntTSL 1 (best)19.62■□□□□ 0.738e-10■■■□□ 18.5
U2AF1Q01081 WNK2-207ENST00000448251 3224 ntTSL 217.34■□□□□ 0.378e-10■■■□□ 18.5
U2AF1Q01081 WNK2-216ENST00000479696 532 ntTSL 310.54□□□□□ -0.728e-10■■■□□ 18.5
U2AF1Q01081 GGA2-215ENST00000569189 586 ntTSL 532.56■■■□□ 2.81e-7■■■□□ 18.5
U2AF1Q01081 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC28.53■■■□□ 2.161e-7■■■□□ 18.5
U2AF1Q01081 GGA2-212ENST00000568799 1403 ntTSL 528.24■■■□□ 2.111e-7■■■□□ 18.5
U2AF1Q01081 GGA2-205ENST00000563494 553 ntTSL 528.14■■■□□ 2.11e-7■■■□□ 18.5
U2AF1Q01081 GGA2-201ENST00000309859 5973 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.271e-7■■■□□ 18.5
U2AF1Q01081 GGA2-217ENST00000570111 563 ntTSL 511.04□□□□□ -0.641e-7■■■□□ 18.5
U2AF1Q01081 GGA2-209ENST00000567201 576 ntTSL 48.05□□□□□ -1.121e-7■■■□□ 18.5
U2AF1Q01081 GGA2-216ENST00000569300 572 ntTSL 47.66□□□□□ -1.181e-7■■■□□ 18.5
U2AF1Q01081 PGK1-203ENST00000476531 960 ntTSL 213.86□□□□□ -0.195e-66■■■□□ 18.4
U2AF1Q01081 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC19.05■□□□□ 0.643e-10■■■□□ 18.4
U2AF1Q01081 AKR1C2-204ENST00000460124 2639 ntTSL 59.83□□□□□ -0.843e-10■■■□□ 18.4
U2AF1Q01081 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.933e-10■■■□□ 18.4
U2AF1Q01081 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC7.76□□□□□ -1.173e-10■■■□□ 18.4
U2AF1Q01081 AKR1C2-209ENST00000604507 745 ntTSL 57.18□□□□□ -1.263e-10■■■□□ 18.4
U2AF1Q01081 AKR1C2-206ENST00000604184 553 ntTSL 25.33□□□□□ -1.563e-10■■■□□ 18.4
U2AF1Q01081 COQ6-215ENST00000556300 1244 ntTSL 1 (best)24.14■■□□□ 1.457e-6■■■□□ 18.4
U2AF1Q01081 COQ6-217ENST00000557205 1242 ntTSL 223.33■■□□□ 1.337e-6■■■□□ 18.4
U2AF1Q01081 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.257e-6■■■□□ 18.4
U2AF1Q01081 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC22.55■■□□□ 1.27e-6■■■□□ 18.4
U2AF1Q01081 COQ6-218ENST00000557584 1013 ntTSL 221.33■■□□□ 1.017e-6■■■□□ 18.4
U2AF1Q01081 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.95■□□□□ 0.947e-6■■■□□ 18.4
U2AF1Q01081 COQ6-209ENST00000554341 1486 ntTSL 1 (best)18.1■□□□□ 0.497e-6■■■□□ 18.4
U2AF1Q01081 COQ6-202ENST00000394026 1608 ntTSL 2 BASIC15.55■□□□□ 0.087e-6■■■□□ 18.4
U2AF1Q01081 COQ6-204ENST00000553462 1455 ntTSL 512.52□□□□□ -0.417e-6■■■□□ 18.4
Retrieved 100 of 10,096 protein–RNA pairs in 56.3 ms