RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-212ENST00000498041 AEBP2Q6ZN18 517 aaPredicted RBP17.49■□□□□ 0.39
RIF1-212ENST00000498041 CHIC1Q5VXU3 224 aa16.44■□□□□ 0.22
RIF1-212ENST00000498041 SENP3Q9H4L4 574 aaPredicted RBP14.92□□□□□ -0.02
RIF1-212ENST00000498041 PHF23Q9BUL5 403 aaPredicted RBP14.75□□□□□ -0.05
RIF1-212ENST00000498041 FOXD1Q16676 465 aa13.96□□□□□ -0.17
RIF1-212ENST00000498041 PLPPR3Q6T4P5 718 aa13.1□□□□□ -0.31
RIF1-212ENST00000498041 MSH5O43196 834 aa13.07□□□□□ -0.32
RIF1-212ENST00000498041 PIAS4Q8N2W9 510 aaPredicted RBP13.07□□□□□ -0.32
RIF1-212ENST00000498041 POTEDQ86YR6 584 aa13.04□□□□□ -0.32
RIF1-212ENST00000498041 ADRA2BP18089 450 aa12.97□□□□□ -0.33
RIF1-212ENST00000498041 PPP6R1Q9UPN7 881 aa12.96□□□□□ -0.33
RIF1-212ENST00000498041 MAPK8IP2Q13387 824 aaPredicted RBP11.97□□□□□ -0.49
RIF1-212ENST00000498041 SCAF1Q9H7N4 1312 aaKnown RBP11.8□□□□□ -0.52
RIF1-212ENST00000498041 DMRT2Q9Y5R5 561 aa11.79□□□□□ -0.52
RIF1-212ENST00000498041 DCAF8L1A6NGE4 600 aa11.55□□□□□ -0.56
RIF1-212ENST00000498041 PPP4R3CPQ6ZMV5 832 aa11.51□□□□□ -0.57
RIF1-212ENST00000498041 CACNB1Q02641 598 aaPredicted RBP11.42□□□□□ -0.58
RIF1-212ENST00000498041 HOXD11P31277 338 aaPredicted RBP11.27□□□□□ -0.61
RIF1-212ENST00000498041 CNKSR2Q8WXI2 1034 aa11.27□□□□□ -0.61
RIF1-212ENST00000498041 RNF216Q9NWF9 866 aaPredicted RBP11.18□□□□□ -0.62
RIF1-212ENST00000498041 RNF39Q9H2S5 420 aa11.13□□□□□ -0.63
RIF1-212ENST00000498041 NCBP3Q53F19 620 aaKnown RBP11.01□□□□□ -0.65
RIF1-212ENST00000498041 C1QBPQ07021 282 aaKnown RBP10.95□□□□□ -0.66
RIF1-212ENST00000498041 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.9□□□□□ -0.663e-6■□□□□ 8.6
RIF1-212ENST00000498041 NPM3O75607 178 aaKnown RBP10.85□□□□□ -0.67
RIF1-212ENST00000498041 DNAJC5BQ9UF47 199 aa10.77□□□□□ -0.69
RIF1-212ENST00000498041 KCNA4P22459 653 aa10.73□□□□□ -0.69
RIF1-212ENST00000498041 U3KPZ7 1027 aaPredicted RBP10.58□□□□□ -0.72
RIF1-212ENST00000498041 CAPN15O75808 1086 aa10.56□□□□□ -0.72
RIF1-212ENST00000498041 SPINK5Q9NQ38 1064 aaPredicted RBP10.52□□□□□ -0.73
RIF1-212ENST00000498041 DSG3P32926 999 aa10.41□□□□□ -0.74
RIF1-212ENST00000498041 SLC4A2P04920 1241 aa10.38□□□□□ -0.75
RIF1-212ENST00000498041 TRHP20396 242 aaPredicted RBP10.38□□□□□ -0.75
RIF1-212ENST00000498041 ABCB7O75027 752 aa10.34□□□□□ -0.75
RIF1-212ENST00000498041 APLP2Q06481 763 aa10.24□□□□□ -0.77
RIF1-212ENST00000498041 SLC4A1APQ9BWU0 796 aaKnown RBP10.24□□□□□ -0.77
RIF1-212ENST00000498041 ZNF219Q9P2Y4 722 aaPredicted RBP10.22□□□□□ -0.77
RIF1-212ENST00000498041 POTEHQ6S545 545 aa10.2□□□□□ -0.78
RIF1-212ENST00000498041 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.19□□□□□ -0.78
RIF1-212ENST00000498041 HNRNPUL2Q1KMD3 747 aaKnown RBP10.19□□□□□ -0.78
RIF1-212ENST00000498041 SAMD1Q6SPF0 538 aaPredicted RBP10.14□□□□□ -0.79
RIF1-212ENST00000498041 MYCNP04198 464 aaPredicted RBP10.02□□□□□ -0.81
RIF1-212ENST00000498041 POLA2Q14181 598 aa10.01□□□□□ -0.81
RIF1-212ENST00000498041 EHMT2Q96KQ7 1210 aa9.95□□□□□ -0.82
RIF1-212ENST00000498041 RBM42Q9BTD8 480 aaKnown RBP9.92□□□□□ -0.82
RIF1-212ENST00000498041 FOXD4L1Q9NU39 408 aa9.89□□□□□ -0.83
RIF1-212ENST00000498041 ZBTB22O15209 634 aa9.86□□□□□ -0.83
RIF1-212ENST00000498041 ATF5Q9Y2D1 282 aaPredicted RBP9.86□□□□□ -0.83
RIF1-212ENST00000498041 CSRNP3Q8WYN3 585 aa9.84□□□□□ -0.83
RIF1-212ENST00000498041 CHRDL2Q6WN34 429 aa9.8□□□□□ -0.84
RIF1-212ENST00000498041 OSCARQ8IYS5 282 aa9.7□□□□□ -0.86
RIF1-212ENST00000498041 ZBTB12Q9Y330 459 aaPredicted RBP9.7□□□□□ -0.86
RIF1-212ENST00000498041 AKT1S1Q96B36 256 aa9.66□□□□□ -0.86
RIF1-212ENST00000498041 REM2Q8IYK8 340 aaPredicted RBP9.62□□□□□ -0.87
RIF1-212ENST00000498041 ATXN8OSP0DMR3 200 aa9.56□□□□□ -0.88
RIF1-212ENST00000498041 PIP4P2Q8N4L2 257 aa9.54□□□□□ -0.88
RIF1-212ENST00000498041 PITPNM1O00562 1244 aa9.53□□□□□ -0.88
RIF1-212ENST00000498041 HAX1O00165 279 aa9.49□□□□□ -0.89
RIF1-212ENST00000498041 FBLN2P98095 1184 aa9.49□□□□□ -0.89
RIF1-212ENST00000498041 SP7Q8TDD2 431 aaPredicted RBP9.48□□□□□ -0.89
RIF1-212ENST00000498041 CLEC11AQ9Y240 323 aa9.42□□□□□ -0.9
RIF1-212ENST00000498041 FXR2P51116 673 aaKnown RBP eCLIP9.4□□□□□ -0.9
RIF1-212ENST00000498041 SPDYE2BA6NHP3 402 aa9.39□□□□□ -0.91
RIF1-212ENST00000498041 SPDYE6P0CI01 402 aa9.39□□□□□ -0.91
RIF1-212ENST00000498041 SPDYE2Q495Y8 402 aa9.39□□□□□ -0.91
RIF1-212ENST00000498041 MKRN4PQ13434 485 aaPredicted RBP9.35□□□□□ -0.91
RIF1-212ENST00000498041 ZNF692Q9BU19 519 aaPredicted RBP9.35□□□□□ -0.91
RIF1-212ENST00000498041 PRKAR2AP13861 404 aaKnown RBP9.32□□□□□ -0.92
RIF1-212ENST00000498041 EVX2Q03828 476 aa9.31□□□□□ -0.92
RIF1-212ENST00000498041 SPDYE1Q8NFV5 336 aaPredicted RBP9.3□□□□□ -0.92
RIF1-212ENST00000498041 CHADLQ6NUI6 762 aa9.24□□□□□ -0.93
RIF1-212ENST00000498041 SSUH2Q9Y2M2 353 aa9.22□□□□□ -0.93
RIF1-212ENST00000498041 PABPN1Q86U42 306 aaKnown RBP eCLIP9.21□□□□□ -0.94
RIF1-212ENST00000498041 PRR29P0C7W0 189 aa9.18□□□□□ -0.94
RIF1-212ENST00000498041 C19orf67A6NJJ6 358 aa9.12□□□□□ -0.95
RIF1-212ENST00000498041 GABBR2O75899 941 aa9.07□□□□□ -0.96
RIF1-212ENST00000498041 CD44P16070 742 aaKnown RBP9.01□□□□□ -0.97
RIF1-212ENST00000498041 FARP1Q9Y4F1 1045 aaPredicted RBP9□□□□□ -0.97
RIF1-212ENST00000498041 LHX8Q68G74 356 aa8.93□□□□□ -0.98
RIF1-212ENST00000498041 SPDYE4A6NLX3 237 aa8.9□□□□□ -0.98
RIF1-212ENST00000498041 FKBP8Q14318 412 aa8.9□□□□□ -0.98
RIF1-212ENST00000498041 ZRANB1Q9UGI0 708 aa8.89□□□□□ -0.99
RIF1-212ENST00000498041 DCBLD2Q96PD2 775 aa8.86□□□□□ -0.99
RIF1-212ENST00000498041 CREBZFQ9NS37 354 aa8.86□□□□□ -0.99
RIF1-212ENST00000498041 POTEIP0CG38 1075 aa8.85□□□□□ -0.99
RIF1-212ENST00000498041 STAG3Q9UJ98 1225 aa8.85□□□□□ -0.99
RIF1-212ENST00000498041 PAK3O75914 559 aaPredicted RBP8.77□□□□□ -1.01
RIF1-212ENST00000498041 ZNF579Q8NAF0 562 aaKnown RBP8.77□□□□□ -1.01
RIF1-212ENST00000498041 GALR2O43603 387 aaPredicted RBP8.76□□□□□ -1.01
RIF1-212ENST00000498041 PHF12Q96QT6 1004 aa8.76□□□□□ -1.01
RIF1-212ENST00000498041 CLCN6P51797 869 aa8.73□□□□□ -1.01
RIF1-212ENST00000498041 PROM2Q8N271 834 aa8.73□□□□□ -1.01
RIF1-212ENST00000498041 NPM1P06748 294 aaKnown RBP eCLIP8.71□□□□□ -1.02
RIF1-212ENST00000498041 TSPYL2Q9H2G4 693 aaPredicted RBP8.65□□□□□ -1.02
RIF1-212ENST00000498041 MNX1P50219 401 aaPredicted RBP8.63□□□□□ -1.03
RIF1-212ENST00000498041 PLSCR2Q9NRY7 297 aa8.61□□□□□ -1.03
RIF1-212ENST00000498041 FBXO3Q9UK99 471 aa8.61□□□□□ -1.03
RIF1-212ENST00000498041 MS4A3Q96HJ5 214 aa8.6□□□□□ -1.03
RIF1-212ENST00000498041 PELP1Q8IZL8 1130 aaKnown RBP8.59□□□□□ -1.03
RIF1-212ENST00000498041 POTEB2H3BUK9 544 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms