Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CX3CL1P78423 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.58■□□□□ 0.41
CX3CL1P78423 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CX3CL1P78423 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
CX3CL1P78423 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CX3CL1P78423 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC17.58■□□□□ 0.4
CX3CL1P78423 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CX3CL1P78423 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CX3CL1P78423 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CX3CL1P78423 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.58■□□□□ 0.4
CX3CL1P78423 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CX3CL1P78423 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CX3CL1P78423 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CX3CL1P78423 GTSE1-AS1-202ENST00000623117 1518 ntBASIC17.57■□□□□ 0.4
CX3CL1P78423 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CX3CL1P78423 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
CX3CL1P78423 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CX3CL1P78423 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CX3CL1P78423 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CX3CL1P78423 AC137767.1-201ENST00000602918 1920 ntBASIC17.57■□□□□ 0.4
CX3CL1P78423 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CX3CL1P78423 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CX3CL1P78423 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.57■□□□□ 0.4
CX3CL1P78423 AL499627.2-201ENST00000606283 725 ntBASIC17.57■□□□□ 0.4
CX3CL1P78423 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CX3CL1P78423 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.57■□□□□ 0.4
CX3CL1P78423 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
CX3CL1P78423 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CX3CL1P78423 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC17.57■□□□□ 0.4
CX3CL1P78423 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CX3CL1P78423 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
CX3CL1P78423 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.57■□□□□ 0.4
CX3CL1P78423 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.57■□□□□ 0.4
CX3CL1P78423 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.56■□□□□ 0.4
CX3CL1P78423 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CX3CL1P78423 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CX3CL1P78423 AC008406.3-201ENST00000620001 1374 ntBASIC17.56■□□□□ 0.4
CX3CL1P78423 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CX3CL1P78423 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.56■□□□□ 0.4
CX3CL1P78423 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CX3CL1P78423 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CX3CL1P78423 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CX3CL1P78423 pRNA.6-201ENST00000610482 90 ntBASIC17.56■□□□□ 0.4
CX3CL1P78423 pRNA.5-201ENST00000612139 90 ntBASIC17.56■□□□□ 0.4
CX3CL1P78423 pRNA.11-201ENST00000618423 90 ntBASIC17.56■□□□□ 0.4
CX3CL1P78423 pRNA.13-201ENST00000619112 90 ntBASIC17.56■□□□□ 0.4
CX3CL1P78423 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CX3CL1P78423 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.56■□□□□ 0.4
CX3CL1P78423 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CX3CL1P78423 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CX3CL1P78423 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.56■□□□□ 0.4
CX3CL1P78423 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.55■□□□□ 0.4
CX3CL1P78423 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CX3CL1P78423 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.55■□□□□ 0.4
CX3CL1P78423 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC17.55■□□□□ 0.4
CX3CL1P78423 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.55■□□□□ 0.4
CX3CL1P78423 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.55■□□□□ 0.4
CX3CL1P78423 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CX3CL1P78423 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.55■□□□□ 0.4
CX3CL1P78423 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CX3CL1P78423 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 DUX4L19-201ENST00000557448 1267 ntBASIC17.54■□□□□ 0.4
CX3CL1P78423 MIR3181-201ENST00000578512 73 ntBASIC17.54■□□□□ 0.4
CX3CL1P78423 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.54■□□□□ 0.4
CX3CL1P78423 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC17.54■□□□□ 0.4
CX3CL1P78423 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CX3CL1P78423 AC004687.1-201ENST00000579003 1625 ntBASIC17.54■□□□□ 0.4
CX3CL1P78423 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CX3CL1P78423 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CX3CL1P78423 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CX3CL1P78423 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CX3CL1P78423 AC127496.7-201ENST00000625110 1798 ntBASIC17.53■□□□□ 0.4
CX3CL1P78423 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CX3CL1P78423 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.53■□□□□ 0.4
CX3CL1P78423 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CX3CL1P78423 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.53■□□□□ 0.4
CX3CL1P78423 C1orf229-201ENST00000623686 2258 ntBASIC17.53■□□□□ 0.4
CX3CL1P78423 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CX3CL1P78423 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms