Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.17■■□□□ 1.62
CCNA1P78396 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC25.17■■□□□ 1.62
CCNA1P78396 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCNA1P78396 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCNA1P78396 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC25.16■■□□□ 1.62
CCNA1P78396 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.16■■□□□ 1.62
CCNA1P78396 AC079140.4-201ENST00000507448 529 ntBASIC25.16■■□□□ 1.62
CCNA1P78396 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
CCNA1P78396 OXCT2P1-201ENST00000447263 1535 ntBASIC25.16■■□□□ 1.62
CCNA1P78396 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCNA1P78396 AL353803.4-201ENST00000565882 1934 ntBASIC25.16■■□□□ 1.62
CCNA1P78396 LINC00543-201ENST00000567234 1845 ntBASIC25.15■■□□□ 1.62
CCNA1P78396 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC25.15■■□□□ 1.62
CCNA1P78396 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC25.15■■□□□ 1.62
CCNA1P78396 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.15■■□□□ 1.62
CCNA1P78396 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CCNA1P78396 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CCNA1P78396 EMC9-206ENST00000560403 872 ntTSL 2 BASIC25.14■■□□□ 1.62
CCNA1P78396 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCNA1P78396 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CCNA1P78396 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CCNA1P78396 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
CCNA1P78396 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CCNA1P78396 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CCNA1P78396 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCNA1P78396 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCNA1P78396 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCNA1P78396 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC25.13■■□□□ 1.61
CCNA1P78396 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CCNA1P78396 AC104771.1-201ENST00000603335 964 ntBASIC25.13■■□□□ 1.61
CCNA1P78396 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC25.13■■□□□ 1.61
CCNA1P78396 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCNA1P78396 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
CCNA1P78396 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC25.13■■□□□ 1.61
CCNA1P78396 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCNA1P78396 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC25.12■■□□□ 1.61
CCNA1P78396 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC25.12■■□□□ 1.61
CCNA1P78396 AC011767.1-201ENST00000617410 1153 ntBASIC25.12■■□□□ 1.61
CCNA1P78396 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCNA1P78396 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.12■■□□□ 1.61
CCNA1P78396 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCNA1P78396 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCNA1P78396 MAP2K4P1-201ENST00000438453 1195 ntBASIC25.11■■□□□ 1.61
CCNA1P78396 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.11■■□□□ 1.61
CCNA1P78396 SPI1-203ENST00000533030 661 ntTSL 2 BASIC25.11■■□□□ 1.61
CCNA1P78396 MDK-213ENST00000617138 635 ntTSL 2 BASIC25.11■■□□□ 1.61
CCNA1P78396 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
CCNA1P78396 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.11■■□□□ 1.61
CCNA1P78396 ESRRAP2-201ENST00000418437 1549 ntBASIC25.11■■□□□ 1.61
CCNA1P78396 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.11■■□□□ 1.61
CCNA1P78396 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCNA1P78396 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCNA1P78396 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCNA1P78396 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
CCNA1P78396 CROCCP5-201ENST00000436658 830 ntBASIC25.1■■□□□ 1.61
CCNA1P78396 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC25.1■■□□□ 1.61
CCNA1P78396 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC25.1■■□□□ 1.61
CCNA1P78396 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC25.1■■□□□ 1.61
CCNA1P78396 AL109923.1-201ENST00000618799 583 ntBASIC25.1■■□□□ 1.61
CCNA1P78396 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
CCNA1P78396 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.1■■□□□ 1.61
CCNA1P78396 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.1■■□□□ 1.61
CCNA1P78396 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCNA1P78396 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCNA1P78396 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCNA1P78396 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.09■■□□□ 1.61
CCNA1P78396 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC25.09■■□□□ 1.61
CCNA1P78396 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCNA1P78396 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCNA1P78396 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
CCNA1P78396 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCNA1P78396 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCNA1P78396 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCNA1P78396 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCNA1P78396 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.08■■□□□ 1.61
CCNA1P78396 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCNA1P78396 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCNA1P78396 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCNA1P78396 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCNA1P78396 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.08■■□□□ 1.61
CCNA1P78396 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
CCNA1P78396 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCNA1P78396 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCNA1P78396 NCF1B-203ENST00000435988 1254 ntBASIC25.07■■□□□ 1.6
CCNA1P78396 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC25.07■■□□□ 1.6
CCNA1P78396 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCNA1P78396 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC25.07■■□□□ 1.6
CCNA1P78396 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCNA1P78396 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCNA1P78396 LINC01124-201ENST00000409786 2117 ntBASIC25.06■■□□□ 1.6
CCNA1P78396 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.06■■□□□ 1.6
CCNA1P78396 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.06■■□□□ 1.6
CCNA1P78396 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC25.06■■□□□ 1.6
CCNA1P78396 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC25.06■■□□□ 1.6
CCNA1P78396 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
CCNA1P78396 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC25.06■■□□□ 1.6
CCNA1P78396 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCNA1P78396 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CCNA1P78396 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCNA1P78396 ASL-203ENST00000380839 1765 ntTSL 5 BASIC25.05■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms