Protein–RNA interactions for Protein: P51800

CLCNKA, Chloride channel protein ClC-Ka, humanhuman

Predictions only

Length 687 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKAP51800 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.5■■□□□ 1.03
CLCNKAP51800 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
CLCNKAP51800 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLCNKAP51800 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.49■■□□□ 1.03
CLCNKAP51800 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCNKAP51800 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCNKAP51800 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.49■■□□□ 1.03
CLCNKAP51800 MIR6821-201ENST00000617625 74 ntBASIC21.49■■□□□ 1.03
CLCNKAP51800 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLCNKAP51800 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLCNKAP51800 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.49■■□□□ 1.03
CLCNKAP51800 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CLCNKAP51800 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CLCNKAP51800 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.48■■□□□ 1.03
CLCNKAP51800 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.48■■□□□ 1.03
CLCNKAP51800 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLCNKAP51800 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.48■■□□□ 1.03
CLCNKAP51800 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCNKAP51800 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.48■■□□□ 1.03
CLCNKAP51800 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.48■■□□□ 1.03
CLCNKAP51800 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.48■■□□□ 1.03
CLCNKAP51800 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.48■■□□□ 1.03
CLCNKAP51800 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.48■■□□□ 1.03
CLCNKAP51800 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.48■■□□□ 1.03
CLCNKAP51800 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.48■■□□□ 1.03
CLCNKAP51800 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCNKAP51800 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CLCNKAP51800 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.48■■□□□ 1.03
CLCNKAP51800 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CLCNKAP51800 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLCNKAP51800 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.48■■□□□ 1.03
CLCNKAP51800 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCNKAP51800 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLCNKAP51800 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLCNKAP51800 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLCNKAP51800 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.47■■□□□ 1.03
CLCNKAP51800 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLCNKAP51800 AC097381.1-201ENST00000429019 1296 ntBASIC21.47■■□□□ 1.03
CLCNKAP51800 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.47■■□□□ 1.03
CLCNKAP51800 AL354811.1-201ENST00000610286 706 ntBASIC21.47■■□□□ 1.03
CLCNKAP51800 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.47■■□□□ 1.03
CLCNKAP51800 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLCNKAP51800 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
CLCNKAP51800 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLCNKAP51800 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CLCNKAP51800 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLCNKAP51800 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.46■■□□□ 1.03
CLCNKAP51800 AC010141.3-201ENST00000456659 717 ntBASIC21.46■■□□□ 1.03
CLCNKAP51800 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLCNKAP51800 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.46■■□□□ 1.03
CLCNKAP51800 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.46■■□□□ 1.03
CLCNKAP51800 AC087239.1-201ENST00000622671 572 ntBASIC21.46■■□□□ 1.03
CLCNKAP51800 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.46■■□□□ 1.03
CLCNKAP51800 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLCNKAP51800 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLCNKAP51800 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.45■■□□□ 1.02
CLCNKAP51800 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCNKAP51800 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCNKAP51800 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.45■■□□□ 1.02
CLCNKAP51800 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CLCNKAP51800 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCNKAP51800 AC012414.1-201ENST00000556676 535 ntBASIC21.45■■□□□ 1.02
CLCNKAP51800 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.45■■□□□ 1.02
CLCNKAP51800 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.45■■□□□ 1.02
CLCNKAP51800 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CLCNKAP51800 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCNKAP51800 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCNKAP51800 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.45■■□□□ 1.02
CLCNKAP51800 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
CLCNKAP51800 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCNKAP51800 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.44■■□□□ 1.02
CLCNKAP51800 AC027612.3-201ENST00000413684 1047 ntBASIC21.44■■□□□ 1.02
CLCNKAP51800 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.44■■□□□ 1.02
CLCNKAP51800 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.44■■□□□ 1.02
CLCNKAP51800 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.44■■□□□ 1.02
CLCNKAP51800 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCNKAP51800 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.43■■□□□ 1.02
CLCNKAP51800 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCNKAP51800 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCNKAP51800 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.43■■□□□ 1.02
CLCNKAP51800 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.43■■□□□ 1.02
CLCNKAP51800 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCNKAP51800 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
CLCNKAP51800 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCNKAP51800 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.42■■□□□ 1.02
CLCNKAP51800 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CLCNKAP51800 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCNKAP51800 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CLCNKAP51800 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCNKAP51800 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CLCNKAP51800 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCNKAP51800 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms