Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 AL137060.1-201ENST00000618151 2648 ntBASIC21.04■□□□□ 0.96
LDLRP01130 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.04■□□□□ 0.96
LDLRP01130 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.04■□□□□ 0.96
LDLRP01130 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
LDLRP01130 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDLRP01130 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDLRP01130 AL136162.1-201ENST00000607711 1078 ntBASIC21.03■□□□□ 0.96
LDLRP01130 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.03■□□□□ 0.96
LDLRP01130 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.03■□□□□ 0.96
LDLRP01130 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDLRP01130 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDLRP01130 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDLRP01130 AL022069.1-201ENST00000568025 1636 ntBASIC21.03■□□□□ 0.96
LDLRP01130 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LDLRP01130 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LDLRP01130 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LDLRP01130 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LDLRP01130 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.02■□□□□ 0.96
LDLRP01130 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.02■□□□□ 0.96
LDLRP01130 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LDLRP01130 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.02■□□□□ 0.96
LDLRP01130 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.02■□□□□ 0.96
LDLRP01130 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.02■□□□□ 0.96
LDLRP01130 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LDLRP01130 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LDLRP01130 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LDLRP01130 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LDLRP01130 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LDLRP01130 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LDLRP01130 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LDLRP01130 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LDLRP01130 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LDLRP01130 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.01■□□□□ 0.95
LDLRP01130 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
LDLRP01130 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.01■□□□□ 0.95
LDLRP01130 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.01■□□□□ 0.95
LDLRP01130 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
LDLRP01130 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21■□□□□ 0.95
LDLRP01130 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21■□□□□ 0.95
LDLRP01130 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
LDLRP01130 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
LDLRP01130 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21■□□□□ 0.95
LDLRP01130 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 EDA-201ENST00000338901 1233 ntBASIC21■□□□□ 0.95
LDLRP01130 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
LDLRP01130 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LDLRP01130 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.99■□□□□ 0.95
LDLRP01130 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LDLRP01130 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LDLRP01130 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.99■□□□□ 0.95
LDLRP01130 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LDLRP01130 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LDLRP01130 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LDLRP01130 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.99■□□□□ 0.95
LDLRP01130 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LDLRP01130 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
LDLRP01130 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.99■□□□□ 0.95
LDLRP01130 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.99■□□□□ 0.95
LDLRP01130 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LDLRP01130 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
LDLRP01130 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LDLRP01130 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
LDLRP01130 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
LDLRP01130 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LDLRP01130 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.98■□□□□ 0.95
LDLRP01130 AL355001.2-201ENST00000620617 1191 ntBASIC20.98■□□□□ 0.95
LDLRP01130 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LDLRP01130 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LDLRP01130 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LDLRP01130 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LDLRP01130 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LDLRP01130 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LDLRP01130 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
LDLRP01130 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LDLRP01130 C11orf96-202ENST00000528572 1834 ntBASIC20.97■□□□□ 0.95
LDLRP01130 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.97■□□□□ 0.95
LDLRP01130 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LDLRP01130 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LDLRP01130 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
LDLRP01130 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
LDLRP01130 AC105265.2-201ENST00000467189 838 ntBASIC20.97■□□□□ 0.95
LDLRP01130 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms