Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX2-2O95096 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX2-2O95096 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX2-2O95096 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
NKX2-2O95096 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.27■□□□□ 0.84
NKX2-2O95096 AC137767.1-201ENST00000602918 1920 ntBASIC20.27■□□□□ 0.84
NKX2-2O95096 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.27■□□□□ 0.84
NKX2-2O95096 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-2O95096 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-2O95096 UNC93B3-201ENST00000308076 687 ntBASIC20.27■□□□□ 0.84
NKX2-2O95096 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-2O95096 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-2O95096 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-2O95096 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-2O95096 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-2O95096 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
NKX2-2O95096 AC068587.7-201ENST00000641602 218 ntBASIC20.27■□□□□ 0.84
NKX2-2O95096 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
NKX2-2O95096 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-2O95096 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NKX2-2O95096 AC079834.2-201ENST00000609776 1949 ntBASIC20.27■□□□□ 0.84
NKX2-2O95096 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NKX2-2O95096 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX2-2O95096 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NKX2-2O95096 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX2-2O95096 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.26■□□□□ 0.83
NKX2-2O95096 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NKX2-2O95096 AC010525.1-201ENST00000585559 441 ntBASIC20.26■□□□□ 0.83
NKX2-2O95096 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
NKX2-2O95096 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX2-2O95096 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.26■□□□□ 0.83
NKX2-2O95096 AC139530.1-201ENST00000575312 1977 ntBASIC20.26■□□□□ 0.83
NKX2-2O95096 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX2-2O95096 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-2O95096 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
NKX2-2O95096 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-2O95096 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-2O95096 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
NKX2-2O95096 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-2O95096 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.25■□□□□ 0.83
NKX2-2O95096 LINC00526-201ENST00000581067 1875 ntBASIC20.25■□□□□ 0.83
NKX2-2O95096 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-2O95096 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NKX2-2O95096 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.25■□□□□ 0.83
NKX2-2O95096 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-2O95096 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.25■□□□□ 0.83
NKX2-2O95096 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.25■□□□□ 0.83
NKX2-2O95096 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
NKX2-2O95096 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-2O95096 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-2O95096 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.24■□□□□ 0.83
NKX2-2O95096 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.24■□□□□ 0.83
NKX2-2O95096 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
NKX2-2O95096 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.24■□□□□ 0.83
NKX2-2O95096 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.24■□□□□ 0.83
NKX2-2O95096 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.24■□□□□ 0.83
NKX2-2O95096 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.24■□□□□ 0.83
NKX2-2O95096 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
NKX2-2O95096 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-2O95096 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NKX2-2O95096 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NKX2-2O95096 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-2O95096 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NKX2-2O95096 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 AL136162.1-201ENST00000607711 1078 ntBASIC20.23■□□□□ 0.83
NKX2-2O95096 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
NKX2-2O95096 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
NKX2-2O95096 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-2O95096 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-2O95096 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-2O95096 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-2O95096 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-2O95096 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.22■□□□□ 0.83
NKX2-2O95096 AC024257.2-201ENST00000549699 147 ntBASIC20.22■□□□□ 0.83
NKX2-2O95096 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.22■□□□□ 0.83
NKX2-2O95096 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-2O95096 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.22■□□□□ 0.83
NKX2-2O95096 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
NKX2-2O95096 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.22■□□□□ 0.83
NKX2-2O95096 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.22■□□□□ 0.83
NKX2-2O95096 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-2O95096 EP400NL-214ENST00000641289 2402 ntBASIC20.22■□□□□ 0.83
NKX2-2O95096 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms