Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SSX4O60224 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSX4O60224 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SSX4O60224 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SSX4O60224 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSX4O60224 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSX4O60224 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSX4O60224 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.72■□□□□ 0.75
SSX4O60224 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSX4O60224 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.72■□□□□ 0.75
SSX4O60224 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.72■□□□□ 0.75
SSX4O60224 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.72■□□□□ 0.75
SSX4O60224 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SSX4O60224 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SSX4O60224 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSX4O60224 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSX4O60224 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SSX4O60224 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SSX4O60224 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SSX4O60224 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX4O60224 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX4O60224 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX4O60224 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.71■□□□□ 0.75
SSX4O60224 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SSX4O60224 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX4O60224 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SSX4O60224 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SSX4O60224 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.71■□□□□ 0.75
SSX4O60224 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.71■□□□□ 0.75
SSX4O60224 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX4O60224 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.71■□□□□ 0.75
SSX4O60224 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX4O60224 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX4O60224 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX4O60224 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX4O60224 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SSX4O60224 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX4O60224 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.7■□□□□ 0.74
SSX4O60224 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SSX4O60224 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX4O60224 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX4O60224 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.7■□□□□ 0.74
SSX4O60224 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.69■□□□□ 0.74
SSX4O60224 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SSX4O60224 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.69■□□□□ 0.74
SSX4O60224 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 AL512631.2-201ENST00000604634 923 ntBASIC19.69■□□□□ 0.74
SSX4O60224 AC005837.3-201ENST00000612163 286 ntBASIC19.69■□□□□ 0.74
SSX4O60224 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.69■□□□□ 0.74
SSX4O60224 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SSX4O60224 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.69■□□□□ 0.74
SSX4O60224 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.69■□□□□ 0.74
SSX4O60224 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SSX4O60224 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SSX4O60224 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SSX4O60224 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SSX4O60224 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SSX4O60224 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.68■□□□□ 0.74
SSX4O60224 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SSX4O60224 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SSX4O60224 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SSX4O60224 SNX5-217ENST00000606557 1087 ntBASIC19.68■□□□□ 0.74
SSX4O60224 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SSX4O60224 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SSX4O60224 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.68■□□□□ 0.74
SSX4O60224 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SSX4O60224 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SSX4O60224 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.67■□□□□ 0.74
SSX4O60224 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.67■□□□□ 0.74
SSX4O60224 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.67■□□□□ 0.74
SSX4O60224 AC026310.3-201ENST00000625186 2373 ntBASIC19.67■□□□□ 0.74
SSX4O60224 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.67■□□□□ 0.74
SSX4O60224 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SSX4O60224 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SSX4O60224 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.66■□□□□ 0.74
SSX4O60224 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SSX4O60224 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.66■□□□□ 0.74
SSX4O60224 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SSX4O60224 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SSX4O60224 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SSX4O60224 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.66■□□□□ 0.74
SSX4O60224 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms