Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
PROM1O43490 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.76■□□□□ 0.91
PROM1O43490 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.76■□□□□ 0.91
PROM1O43490 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.76■□□□□ 0.91
PROM1O43490 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.76■□□□□ 0.91
PROM1O43490 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
PROM1O43490 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PROM1O43490 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PROM1O43490 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
PROM1O43490 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PROM1O43490 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PROM1O43490 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PROM1O43490 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.75■□□□□ 0.91
PROM1O43490 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PROM1O43490 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.75■□□□□ 0.91
PROM1O43490 MIR638-201ENST00000385237 100 ntBASIC20.75■□□□□ 0.91
PROM1O43490 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
PROM1O43490 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.75■□□□□ 0.91
PROM1O43490 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
PROM1O43490 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PROM1O43490 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PROM1O43490 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PROM1O43490 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.75■□□□□ 0.91
PROM1O43490 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PROM1O43490 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
PROM1O43490 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
PROM1O43490 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PROM1O43490 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PROM1O43490 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PROM1O43490 OR2I1P-207ENST00000453522 948 ntBASIC20.74■□□□□ 0.91
PROM1O43490 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PROM1O43490 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.74■□□□□ 0.91
PROM1O43490 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.74■□□□□ 0.91
PROM1O43490 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.74■□□□□ 0.91
PROM1O43490 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PROM1O43490 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
PROM1O43490 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 AC127496.7-201ENST00000625110 1798 ntBASIC20.73■□□□□ 0.91
PROM1O43490 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PROM1O43490 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.73■□□□□ 0.91
PROM1O43490 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PROM1O43490 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.73■□□□□ 0.91
PROM1O43490 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.73■□□□□ 0.91
PROM1O43490 AL136162.1-201ENST00000607711 1078 ntBASIC20.73■□□□□ 0.91
PROM1O43490 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.73■□□□□ 0.91
PROM1O43490 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PROM1O43490 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PROM1O43490 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PROM1O43490 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PROM1O43490 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.72■□□□□ 0.91
PROM1O43490 AC096631.2-201ENST00000436136 790 ntBASIC20.72■□□□□ 0.91
PROM1O43490 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PROM1O43490 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
PROM1O43490 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PROM1O43490 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PROM1O43490 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
PROM1O43490 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PROM1O43490 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.71■□□□□ 0.91
PROM1O43490 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.71■□□□□ 0.91
PROM1O43490 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.71■□□□□ 0.91
PROM1O43490 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.71■□□□□ 0.91
PROM1O43490 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.71■□□□□ 0.91
PROM1O43490 AC024257.2-201ENST00000549699 147 ntBASIC20.71■□□□□ 0.91
PROM1O43490 AL031602.1-201ENST00000633169 911 ntBASIC20.71■□□□□ 0.91
PROM1O43490 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.71■□□□□ 0.91
PROM1O43490 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PROM1O43490 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
PROM1O43490 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.91
PROM1O43490 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms