Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
PHGDHO43175 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PHGDHO43175 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.77■■□□□ 1.08
PHGDHO43175 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.77■■□□□ 1.08
PHGDHO43175 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PHGDHO43175 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
PHGDHO43175 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PHGDHO43175 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
PHGDHO43175 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PHGDHO43175 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PHGDHO43175 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PHGDHO43175 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
PHGDHO43175 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.77■■□□□ 1.08
PHGDHO43175 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
PHGDHO43175 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PHGDHO43175 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PHGDHO43175 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PHGDHO43175 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PHGDHO43175 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PHGDHO43175 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PHGDHO43175 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.76■■□□□ 1.07
PHGDHO43175 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.76■■□□□ 1.07
PHGDHO43175 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PHGDHO43175 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.76■■□□□ 1.07
PHGDHO43175 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.76■■□□□ 1.07
PHGDHO43175 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
PHGDHO43175 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.75■■□□□ 1.07
PHGDHO43175 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.75■■□□□ 1.07
PHGDHO43175 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PHGDHO43175 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PHGDHO43175 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PHGDHO43175 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PHGDHO43175 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PHGDHO43175 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PHGDHO43175 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PHGDHO43175 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
PHGDHO43175 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PHGDHO43175 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.74■■□□□ 1.07
PHGDHO43175 FBXW4P1-201ENST00000426721 2239 ntBASIC21.74■■□□□ 1.07
PHGDHO43175 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PHGDHO43175 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
PHGDHO43175 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
PHGDHO43175 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PHGDHO43175 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PHGDHO43175 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PHGDHO43175 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PHGDHO43175 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.73■■□□□ 1.07
PHGDHO43175 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PHGDHO43175 MIR6724-1-201ENST00000616420 92 ntBASIC21.73■■□□□ 1.07
PHGDHO43175 MIR6724-2-201ENST00000616483 92 ntBASIC21.73■■□□□ 1.07
PHGDHO43175 MIR6724-4-201ENST00000617390 92 ntBASIC21.73■■□□□ 1.07
PHGDHO43175 MIR6724-3-201ENST00000622482 92 ntBASIC21.73■■□□□ 1.07
PHGDHO43175 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PHGDHO43175 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PHGDHO43175 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.73■■□□□ 1.07
PHGDHO43175 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PHGDHO43175 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PHGDHO43175 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PHGDHO43175 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PHGDHO43175 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
PHGDHO43175 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.72■■□□□ 1.07
PHGDHO43175 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.72■■□□□ 1.07
PHGDHO43175 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.72■■□□□ 1.07
PHGDHO43175 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PHGDHO43175 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.72■■□□□ 1.07
PHGDHO43175 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PHGDHO43175 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PHGDHO43175 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PHGDHO43175 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PHGDHO43175 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.71■■□□□ 1.07
PHGDHO43175 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PHGDHO43175 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
PHGDHO43175 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.71■■□□□ 1.07
PHGDHO43175 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.71■■□□□ 1.07
PHGDHO43175 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.71■■□□□ 1.07
PHGDHO43175 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PHGDHO43175 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.71■■□□□ 1.07
PHGDHO43175 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PHGDHO43175 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PHGDHO43175 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PHGDHO43175 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.7■■□□□ 1.07
PHGDHO43175 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PHGDHO43175 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
PHGDHO43175 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.7■■□□□ 1.06
PHGDHO43175 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.7■■□□□ 1.06
PHGDHO43175 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PHGDHO43175 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.7■■□□□ 1.06
PHGDHO43175 AL117332.1-201ENST00000622628 974 ntBASIC21.7■■□□□ 1.06
PHGDHO43175 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PHGDHO43175 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PHGDHO43175 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
PHGDHO43175 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.7■■□□□ 1.06
PHGDHO43175 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PHGDHO43175 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PHGDHO43175 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.69■■□□□ 1.06
PHGDHO43175 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
PHGDHO43175 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
PHGDHO43175 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.69■■□□□ 1.06
PHGDHO43175 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.69■■□□□ 1.06
PHGDHO43175 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms