Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC38.15■■■■□ 3.7
CUX2O14529 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC38.15■■■■□ 3.7
CUX2O14529 RHOD-202ENST00000532559 538 ntTSL 3 BASIC38.15■■■■□ 3.7
CUX2O14529 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC38.15■■■■□ 3.7
CUX2O14529 MYCNOS-205ENST00000641950 531 ntBASIC38.15■■■■□ 3.7
CUX2O14529 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC38.15■■■■□ 3.7
CUX2O14529 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC38.15■■■■□ 3.7
CUX2O14529 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC38.15■■■■□ 3.7
CUX2O14529 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC38.15■■■■□ 3.7
CUX2O14529 MIPEPP3-201ENST00000412105 444 ntBASIC38.15■■■■□ 3.7
CUX2O14529 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC38.15■■■■□ 3.7
CUX2O14529 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC38.15■■■■□ 3.7
CUX2O14529 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC38.15■■■■□ 3.7
CUX2O14529 MIR4497-201ENST00000583208 89 ntBASIC38.15■■■■□ 3.7
CUX2O14529 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC38.15■■■■□ 3.7
CUX2O14529 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC38.15■■■■□ 3.7
CUX2O14529 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC38.15■■■■□ 3.7
CUX2O14529 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC38.14■■■■□ 3.7
CUX2O14529 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC38.14■■■■□ 3.7
CUX2O14529 RARA-203ENST00000394086 2008 ntTSL 2 BASIC38.14■■■■□ 3.7
CUX2O14529 GAS7-202ENST00000396115 929 ntTSL 5 BASIC38.14■■■■□ 3.7
CUX2O14529 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
CUX2O14529 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC38.14■■■■□ 3.7
CUX2O14529 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC38.14■■■■□ 3.7
CUX2O14529 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC38.14■■■■□ 3.7
CUX2O14529 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC38.13■■■■□ 3.69
CUX2O14529 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC38.13■■■■□ 3.69
CUX2O14529 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC38.13■■■■□ 3.69
CUX2O14529 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
CUX2O14529 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
CUX2O14529 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
CUX2O14529 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
CUX2O14529 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC38.12■■■■□ 3.69
CUX2O14529 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC38.12■■■■□ 3.69
CUX2O14529 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC38.12■■■■□ 3.69
CUX2O14529 KRT18P21-201ENST00000515767 1272 ntBASIC38.12■■■■□ 3.69
CUX2O14529 BRI3-207ENST00000539286 699 ntTSL 2 BASIC38.12■■■■□ 3.69
CUX2O14529 PHB2-213ENST00000546111 858 ntTSL 2 BASIC38.12■■■■□ 3.69
CUX2O14529 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC38.12■■■■□ 3.69
CUX2O14529 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC38.12■■■■□ 3.69
CUX2O14529 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
CUX2O14529 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC38.11■■■■□ 3.69
CUX2O14529 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC38.11■■■■□ 3.69
CUX2O14529 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
CUX2O14529 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC38.11■■■■□ 3.69
CUX2O14529 MME-217ENST00000616757 1315 ntTSL 5 BASIC38.1■■■■□ 3.69
CUX2O14529 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC38.1■■■■□ 3.69
CUX2O14529 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC38.1■■■■□ 3.69
CUX2O14529 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC38.1■■■■□ 3.69
CUX2O14529 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC38.1■■■■□ 3.69
CUX2O14529 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC38.09■■■■□ 3.69
CUX2O14529 RPS20-210ENST00000523936 899 ntTSL 2 BASIC38.09■■■■□ 3.69
CUX2O14529 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC38.09■■■■□ 3.69
CUX2O14529 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC38.09■■■■□ 3.69
CUX2O14529 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC38.09■■■■□ 3.69
CUX2O14529 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
CUX2O14529 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC38.09■■■■□ 3.69
CUX2O14529 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC38.09■■■■□ 3.69
CUX2O14529 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC38.09■■■■□ 3.69
CUX2O14529 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC38.08■■■■□ 3.69
CUX2O14529 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC38.08■■■■□ 3.69
CUX2O14529 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC38.08■■■■□ 3.69
CUX2O14529 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
CUX2O14529 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
CUX2O14529 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC38.08■■■■□ 3.69
CUX2O14529 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC38.08■■■■□ 3.69
CUX2O14529 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC38.08■■■■□ 3.69
CUX2O14529 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC38.08■■■■□ 3.69
CUX2O14529 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC38.07■■■■□ 3.69
CUX2O14529 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC38.07■■■■□ 3.69
CUX2O14529 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC38.07■■■■□ 3.69
CUX2O14529 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.68
CUX2O14529 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC38.07■■■■□ 3.68
CUX2O14529 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC38.07■■■■□ 3.68
CUX2O14529 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC38.07■■■■□ 3.68
CUX2O14529 MMAB-206ENST00000540016 945 ntTSL 3 BASIC38.07■■■■□ 3.68
CUX2O14529 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC38.07■■■■□ 3.68
CUX2O14529 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC38.06■■■■□ 3.68
CUX2O14529 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
CUX2O14529 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC38.06■■■■□ 3.68
CUX2O14529 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
CUX2O14529 MYC-209ENST00000641252 345 ntBASIC38.06■■■■□ 3.68
CUX2O14529 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC38.06■■■■□ 3.68
CUX2O14529 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC38.05■■■■□ 3.68
CUX2O14529 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC38.05■■■■□ 3.68
CUX2O14529 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC38.05■■■■□ 3.68
CUX2O14529 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC38.05■■■■□ 3.68
CUX2O14529 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC38.05■■■■□ 3.68
CUX2O14529 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC38.05■■■■□ 3.68
CUX2O14529 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC38.04■■■■□ 3.68
CUX2O14529 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC38.04■■■■□ 3.68
CUX2O14529 AC104187.1-201ENST00000607510 612 ntBASIC38.04■■■■□ 3.68
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms