Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PDLIM1O00151 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
PDLIM1O00151 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
PDLIM1O00151 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.78■□□□□ 0.92
PDLIM1O00151 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.78■□□□□ 0.92
PDLIM1O00151 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.77■□□□□ 0.92
PDLIM1O00151 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.77■□□□□ 0.92
PDLIM1O00151 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.77■□□□□ 0.92
PDLIM1O00151 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.77■□□□□ 0.92
PDLIM1O00151 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PDLIM1O00151 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
PDLIM1O00151 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.77■□□□□ 0.91
PDLIM1O00151 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
PDLIM1O00151 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.77■□□□□ 0.91
PDLIM1O00151 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PDLIM1O00151 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.76■□□□□ 0.91
PDLIM1O00151 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.76■□□□□ 0.91
PDLIM1O00151 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM1O00151 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.76■□□□□ 0.91
PDLIM1O00151 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM1O00151 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM1O00151 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.76■□□□□ 0.91
PDLIM1O00151 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.76■□□□□ 0.91
PDLIM1O00151 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM1O00151 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.76■□□□□ 0.91
PDLIM1O00151 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM1O00151 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.76■□□□□ 0.91
PDLIM1O00151 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PDLIM1O00151 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.76■□□□□ 0.91
PDLIM1O00151 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM1O00151 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.75■□□□□ 0.91
PDLIM1O00151 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM1O00151 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
PDLIM1O00151 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
PDLIM1O00151 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
PDLIM1O00151 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.75■□□□□ 0.91
PDLIM1O00151 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM1O00151 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM1O00151 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.75■□□□□ 0.91
PDLIM1O00151 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM1O00151 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.75■□□□□ 0.91
PDLIM1O00151 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM1O00151 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.75■□□□□ 0.91
PDLIM1O00151 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM1O00151 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM1O00151 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
PDLIM1O00151 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM1O00151 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
PDLIM1O00151 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM1O00151 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM1O00151 KRT18P24-201ENST00000344739 1156 ntBASIC20.74■□□□□ 0.91
PDLIM1O00151 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PDLIM1O00151 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM1O00151 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM1O00151 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.74■□□□□ 0.91
PDLIM1O00151 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM1O00151 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.74■□□□□ 0.91
PDLIM1O00151 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM1O00151 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM1O00151 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM1O00151 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM1O00151 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PDLIM1O00151 AL451085.2-201ENST00000605085 799 ntBASIC20.73■□□□□ 0.91
PDLIM1O00151 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM1O00151 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM1O00151 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM1O00151 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.73■□□□□ 0.91
PDLIM1O00151 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.73■□□□□ 0.91
PDLIM1O00151 AC131274.2-201ENST00000580697 1507 ntBASIC20.73■□□□□ 0.91
PDLIM1O00151 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.72■□□□□ 0.91
PDLIM1O00151 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PDLIM1O00151 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.72■□□□□ 0.91
PDLIM1O00151 AL031848.2-201ENST00000607670 837 ntBASIC20.72■□□□□ 0.91
PDLIM1O00151 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM1O00151 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM1O00151 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
PDLIM1O00151 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM1O00151 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
PDLIM1O00151 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.71■□□□□ 0.91
PDLIM1O00151 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM1O00151 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms