Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
TRIM43BA6NCK2 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.19■■□□□ 1.46
TRIM43BA6NCK2 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
TRIM43BA6NCK2 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.19■■□□□ 1.46
TRIM43BA6NCK2 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 AC007322.1-201ENST00000426983 750 ntBASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM43BA6NCK2 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM43BA6NCK2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.17■■□□□ 1.46
TRIM43BA6NCK2 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC24.17■■□□□ 1.46
TRIM43BA6NCK2 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.17■■□□□ 1.46
TRIM43BA6NCK2 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.17■■□□□ 1.46
TRIM43BA6NCK2 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM43BA6NCK2 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM43BA6NCK2 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.16■■□□□ 1.46
TRIM43BA6NCK2 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM43BA6NCK2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.46
TRIM43BA6NCK2 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 SLC29A4P1-201ENST00000398760 971 ntBASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 AC104187.1-201ENST00000607510 612 ntBASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM43BA6NCK2 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 AC010141.3-201ENST00000456659 717 ntBASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 TBCB-214ENST00000629269 413 ntTSL 5 BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 AC068587.7-201ENST00000641602 218 ntBASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 AC145676.1-201ENST00000514988 2004 ntBASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.13■■□□□ 1.45
TRIM43BA6NCK2 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TRIM43BA6NCK2 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
TRIM43BA6NCK2 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.12■■□□□ 1.45
TRIM43BA6NCK2 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
TRIM43BA6NCK2 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.12■■□□□ 1.45
TRIM43BA6NCK2 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC24.12■■□□□ 1.45
TRIM43BA6NCK2 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.12■■□□□ 1.45
TRIM43BA6NCK2 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TRIM43BA6NCK2 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 AC004687.1-201ENST00000579003 1625 ntBASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 UBE2DNL-204ENST00000602536 740 ntBASIC24.11■■□□□ 1.45
TRIM43BA6NCK2 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms