Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCN3AQ9NY46 RASA4CP-201ENST00000424092 1398 ntBASIC20.89■□□□□ 0.93
SCN3AQ9NY46 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SCN3AQ9NY46 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SCN3AQ9NY46 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.89■□□□□ 0.93
SCN3AQ9NY46 MIR939-201ENST00000401314 82 ntBASIC20.88■□□□□ 0.93
SCN3AQ9NY46 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 AL355001.2-201ENST00000620617 1191 ntBASIC20.88■□□□□ 0.93
SCN3AQ9NY46 C1orf229-201ENST00000623686 2258 ntBASIC20.88■□□□□ 0.93
SCN3AQ9NY46 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 AC233992.3-201ENST00000607491 485 ntBASIC20.88■□□□□ 0.93
SCN3AQ9NY46 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.88■□□□□ 0.93
SCN3AQ9NY46 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN3AQ9NY46 AC068473.5-201ENST00000616428 2072 ntBASIC20.86■□□□□ 0.93
SCN3AQ9NY46 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SCN3AQ9NY46 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 AC105265.2-201ENST00000467189 838 ntBASIC20.85■□□□□ 0.93
SCN3AQ9NY46 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN3AQ9NY46 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SCN3AQ9NY46 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.84■□□□□ 0.93
SCN3AQ9NY46 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SCN3AQ9NY46 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SCN3AQ9NY46 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SCN3AQ9NY46 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SCN3AQ9NY46 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SCN3AQ9NY46 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SCN3AQ9NY46 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.83■□□□□ 0.93
SCN3AQ9NY46 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.83■□□□□ 0.92
SCN3AQ9NY46 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SCN3AQ9NY46 OR2I1P-207ENST00000453522 948 ntBASIC20.83■□□□□ 0.92
SCN3AQ9NY46 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SCN3AQ9NY46 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN3AQ9NY46 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN3AQ9NY46 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN3AQ9NY46 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 CA15P2-201ENST00000611168 834 ntBASIC20.82■□□□□ 0.92
SCN3AQ9NY46 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN3AQ9NY46 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SCN3AQ9NY46 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.81■□□□□ 0.92
SCN3AQ9NY46 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.81■□□□□ 0.92
SCN3AQ9NY46 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.81■□□□□ 0.92
SCN3AQ9NY46 AC027682.1-201ENST00000562846 899 ntBASIC20.81■□□□□ 0.92
SCN3AQ9NY46 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms