Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CLDND1Q9NY35 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.2■■□□□ 1.3
CLDND1Q9NY35 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 AC093827.2-201ENST00000512654 315 ntBASIC23.19■■□□□ 1.3
CLDND1Q9NY35 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.19■■□□□ 1.3
CLDND1Q9NY35 AC231657.2-201ENST00000624556 255 ntBASIC23.19■■□□□ 1.3
CLDND1Q9NY35 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLDND1Q9NY35 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLDND1Q9NY35 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLDND1Q9NY35 SLC29A4P1-201ENST00000398760 971 ntBASIC23.18■■□□□ 1.3
CLDND1Q9NY35 GUSBP6-202ENST00000438529 1198 ntBASIC23.18■■□□□ 1.3
CLDND1Q9NY35 DET1-205ENST00000558413 583 ntTSL 4 BASIC23.18■■□□□ 1.3
CLDND1Q9NY35 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.18■■□□□ 1.3
CLDND1Q9NY35 SMUG1P1-201ENST00000590640 811 ntBASIC23.18■■□□□ 1.3
CLDND1Q9NY35 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.18■■□□□ 1.3
CLDND1Q9NY35 AC135731.1-201ENST00000569415 2548 ntBASIC23.18■■□□□ 1.3
CLDND1Q9NY35 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CLDND1Q9NY35 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 SLC7A5P2-201ENST00000553010 536 ntBASIC23.17■■□□□ 1.3
CLDND1Q9NY35 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 AC005181.1-201ENST00000604782 1256 ntBASIC23.17■■□□□ 1.3
CLDND1Q9NY35 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 CPT2-209ENST00000636935 803 ntTSL 5 BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLDND1Q9NY35 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 AC007322.1-201ENST00000426983 750 ntBASIC23.16■■□□□ 1.3
CLDND1Q9NY35 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLDND1Q9NY35 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLDND1Q9NY35 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.15■■□□□ 1.3
CLDND1Q9NY35 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.15■■□□□ 1.3
CLDND1Q9NY35 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CLDND1Q9NY35 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLDND1Q9NY35 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
CLDND1Q9NY35 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLDND1Q9NY35 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLDND1Q9NY35 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.3
CLDND1Q9NY35 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC23.14■■□□□ 1.3
CLDND1Q9NY35 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 AC068587.7-201ENST00000641602 218 ntBASIC23.14■■□□□ 1.29
CLDND1Q9NY35 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CLDND1Q9NY35 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.13■■□□□ 1.29
CLDND1Q9NY35 DUX4L16-201ENST00000555130 1264 ntBASIC23.13■■□□□ 1.29
CLDND1Q9NY35 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms