Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
DDX28Q9NUL7 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 GUSBP5-202ENST00000510805 1989 ntBASIC19.92■□□□□ 0.78
DDX28Q9NUL7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 YBX1P4-201ENST00000392794 808 ntBASIC19.92■□□□□ 0.78
DDX28Q9NUL7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 AC103724.3-201ENST00000564481 992 ntBASIC19.92■□□□□ 0.78
DDX28Q9NUL7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DDX28Q9NUL7 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 AC004448.1-201ENST00000458332 883 ntBASIC19.91■□□□□ 0.78
DDX28Q9NUL7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.91■□□□□ 0.78
DDX28Q9NUL7 AC092667.1-201ENST00000434301 2586 ntBASIC19.9■□□□□ 0.78
DDX28Q9NUL7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
DDX28Q9NUL7 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
DDX28Q9NUL7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 ANOS2P-203ENST00000472227 1816 ntBASIC19.89■□□□□ 0.77
DDX28Q9NUL7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 KRT8P33-201ENST00000508125 1423 ntBASIC19.89■□□□□ 0.77
DDX28Q9NUL7 AC092068.2-201ENST00000590491 1708 ntBASIC19.89■□□□□ 0.77
DDX28Q9NUL7 AL451085.2-201ENST00000605085 799 ntBASIC19.89■□□□□ 0.77
DDX28Q9NUL7 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
DDX28Q9NUL7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DDX28Q9NUL7 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms