Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.77■■□□□ 1.08
TRIM39Q9HCM9 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
TRIM39Q9HCM9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TRIM39Q9HCM9 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 DUSP8P5-201ENST00000422884 1815 ntBASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM39Q9HCM9 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 AP005435.1-201ENST00000529293 1178 ntBASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM39Q9HCM9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 AC105265.2-201ENST00000467189 838 ntBASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.74■■□□□ 1.07
TRIM39Q9HCM9 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 AC068587.7-201ENST00000641602 218 ntBASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM39Q9HCM9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM39Q9HCM9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM39Q9HCM9 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM39Q9HCM9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.72■■□□□ 1.07
TRIM39Q9HCM9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
TRIM39Q9HCM9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.72■■□□□ 1.07
TRIM39Q9HCM9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
TRIM39Q9HCM9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.71■■□□□ 1.07
TRIM39Q9HCM9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
TRIM39Q9HCM9 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
TRIM39Q9HCM9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 ZNRF2P3-201ENST00000424200 374 ntBASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 IGHV3-19-201ENST00000521488 291 ntBASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 AL031602.1-201ENST00000633169 911 ntBASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms