Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 AC092053.2-201ENST00000640557 1818 ntBASIC21.04■□□□□ 0.96
BRF2Q9HAW0 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.04■□□□□ 0.96
BRF2Q9HAW0 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 AL356441.2-201ENST00000443009 864 ntBASIC21.03■□□□□ 0.96
BRF2Q9HAW0 CA15P2-201ENST00000611168 834 ntBASIC21.03■□□□□ 0.96
BRF2Q9HAW0 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.03■□□□□ 0.96
BRF2Q9HAW0 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
BRF2Q9HAW0 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF2Q9HAW0 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRF2Q9HAW0 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
BRF2Q9HAW0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.02■□□□□ 0.96
BRF2Q9HAW0 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRF2Q9HAW0 AC099791.2-201ENST00000605725 427 ntBASIC21.02■□□□□ 0.96
BRF2Q9HAW0 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.02■□□□□ 0.96
BRF2Q9HAW0 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRF2Q9HAW0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
BRF2Q9HAW0 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
BRF2Q9HAW0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
BRF2Q9HAW0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.01■□□□□ 0.95
BRF2Q9HAW0 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF2Q9HAW0 AC133637.1-201ENST00000624115 1537 ntBASIC21.01■□□□□ 0.95
BRF2Q9HAW0 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRF2Q9HAW0 SRD5A1P1-201ENST00000442297 786 ntBASIC21.01■□□□□ 0.95
BRF2Q9HAW0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRF2Q9HAW0 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.01■□□□□ 0.95
BRF2Q9HAW0 AL512631.2-201ENST00000604634 923 ntBASIC21.01■□□□□ 0.95
BRF2Q9HAW0 AC092171.4-201ENST00000609130 632 ntBASIC21.01■□□□□ 0.95
BRF2Q9HAW0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
BRF2Q9HAW0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF2Q9HAW0 AC006455.2-201ENST00000429931 906 ntBASIC21■□□□□ 0.95
BRF2Q9HAW0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21■□□□□ 0.95
BRF2Q9HAW0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21■□□□□ 0.95
BRF2Q9HAW0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21■□□□□ 0.95
BRF2Q9HAW0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21■□□□□ 0.95
BRF2Q9HAW0 pRNA.6-201ENST00000610482 90 ntBASIC21■□□□□ 0.95
BRF2Q9HAW0 pRNA.5-201ENST00000612139 90 ntBASIC21■□□□□ 0.95
BRF2Q9HAW0 pRNA.11-201ENST00000618423 90 ntBASIC21■□□□□ 0.95
BRF2Q9HAW0 pRNA.13-201ENST00000619112 90 ntBASIC21■□□□□ 0.95
BRF2Q9HAW0 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
BRF2Q9HAW0 AC137767.1-201ENST00000602918 1920 ntBASIC21■□□□□ 0.95
BRF2Q9HAW0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRF2Q9HAW0 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21■□□□□ 0.95
BRF2Q9HAW0 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.99■□□□□ 0.95
BRF2Q9HAW0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF2Q9HAW0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BRF2Q9HAW0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms