Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 MIR4767-201ENST00000582827 78 ntBASIC20.34■□□□□ 0.85
UBQLN3Q9H347 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 AL355001.2-201ENST00000620617 1191 ntBASIC20.34■□□□□ 0.85
UBQLN3Q9H347 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBQLN3Q9H347 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UBQLN3Q9H347 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
UBQLN3Q9H347 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.33■□□□□ 0.85
UBQLN3Q9H347 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
UBQLN3Q9H347 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.33■□□□□ 0.85
UBQLN3Q9H347 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.33■□□□□ 0.85
UBQLN3Q9H347 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.33■□□□□ 0.85
UBQLN3Q9H347 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
UBQLN3Q9H347 AC136469.2-201ENST00000623944 1028 ntBASIC20.33■□□□□ 0.85
UBQLN3Q9H347 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
UBQLN3Q9H347 AC144652.1-201ENST00000609974 1624 ntBASIC20.33■□□□□ 0.84
UBQLN3Q9H347 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
UBQLN3Q9H347 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
UBQLN3Q9H347 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 AC079630.1-202ENST00000618127 1840 ntBASIC20.32■□□□□ 0.84
UBQLN3Q9H347 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBQLN3Q9H347 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBQLN3Q9H347 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UBQLN3Q9H347 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBQLN3Q9H347 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBQLN3Q9H347 LINC00526-201ENST00000581067 1875 ntBASIC20.31■□□□□ 0.84
UBQLN3Q9H347 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UBQLN3Q9H347 DUX4L4-201ENST00000566884 1269 ntBASIC20.31■□□□□ 0.84
UBQLN3Q9H347 pRNA.6-201ENST00000610482 90 ntBASIC20.31■□□□□ 0.84
UBQLN3Q9H347 pRNA.5-201ENST00000612139 90 ntBASIC20.31■□□□□ 0.84
UBQLN3Q9H347 pRNA.11-201ENST00000618423 90 ntBASIC20.31■□□□□ 0.84
UBQLN3Q9H347 pRNA.13-201ENST00000619112 90 ntBASIC20.31■□□□□ 0.84
UBQLN3Q9H347 CLDN5-201ENST00000403084 2357 ntBASIC20.31■□□□□ 0.84
UBQLN3Q9H347 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBQLN3Q9H347 LINC00565-201ENST00000562710 2331 ntBASIC20.31■□□□□ 0.84
UBQLN3Q9H347 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBQLN3Q9H347 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
UBQLN3Q9H347 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 AC142381.2-201ENST00000566120 298 ntBASIC20.3■□□□□ 0.84
UBQLN3Q9H347 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.3■□□□□ 0.84
UBQLN3Q9H347 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
UBQLN3Q9H347 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
UBQLN3Q9H347 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBQLN3Q9H347 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBQLN3Q9H347 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.29■□□□□ 0.84
UBQLN3Q9H347 AP001330.3-201ENST00000520123 633 ntBASIC20.29■□□□□ 0.84
UBQLN3Q9H347 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
UBQLN3Q9H347 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBQLN3Q9H347 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 ECEL1P1-201ENST00000373592 1742 ntBASIC20.28■□□□□ 0.84
UBQLN3Q9H347 LINC01529-204ENST00000636474 1715 ntBASIC20.28■□□□□ 0.84
UBQLN3Q9H347 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 MIR939-201ENST00000401314 82 ntBASIC20.28■□□□□ 0.84
UBQLN3Q9H347 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 AL499627.2-201ENST00000606283 725 ntBASIC20.28■□□□□ 0.84
UBQLN3Q9H347 AL136967.2-201ENST00000623968 743 ntBASIC20.28■□□□□ 0.84
UBQLN3Q9H347 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBQLN3Q9H347 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBQLN3Q9H347 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
UBQLN3Q9H347 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
UBQLN3Q9H347 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms