Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS11Q9H270 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS11Q9H270 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
VPS11Q9H270 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.07■■□□□ 1.12
VPS11Q9H270 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS11Q9H270 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
VPS11Q9H270 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.07■■□□□ 1.12
VPS11Q9H270 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.07■■□□□ 1.12
VPS11Q9H270 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
VPS11Q9H270 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS11Q9H270 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.07■■□□□ 1.12
VPS11Q9H270 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
VPS11Q9H270 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.07■■□□□ 1.12
VPS11Q9H270 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
VPS11Q9H270 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS11Q9H270 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS11Q9H270 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.06■■□□□ 1.12
VPS11Q9H270 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.06■■□□□ 1.12
VPS11Q9H270 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
VPS11Q9H270 AC087742.1-201ENST00000575880 1738 ntBASIC22.06■■□□□ 1.12
VPS11Q9H270 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
VPS11Q9H270 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.06■■□□□ 1.12
VPS11Q9H270 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.06■■□□□ 1.12
VPS11Q9H270 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.06■■□□□ 1.12
VPS11Q9H270 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC22.06■■□□□ 1.12
VPS11Q9H270 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
VPS11Q9H270 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS11Q9H270 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
VPS11Q9H270 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS11Q9H270 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.05■■□□□ 1.12
VPS11Q9H270 AC137630.3-201ENST00000607245 391 ntBASIC22.05■■□□□ 1.12
VPS11Q9H270 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.05■■□□□ 1.12
VPS11Q9H270 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS11Q9H270 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS11Q9H270 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
VPS11Q9H270 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.05■■□□□ 1.12
VPS11Q9H270 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS11Q9H270 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS11Q9H270 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS11Q9H270 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
VPS11Q9H270 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
VPS11Q9H270 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
VPS11Q9H270 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
VPS11Q9H270 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.03■■□□□ 1.12
VPS11Q9H270 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS11Q9H270 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
VPS11Q9H270 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC22.03■■□□□ 1.12
VPS11Q9H270 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
VPS11Q9H270 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
VPS11Q9H270 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS11Q9H270 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS11Q9H270 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS11Q9H270 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.03■■□□□ 1.12
VPS11Q9H270 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.03■■□□□ 1.12
VPS11Q9H270 AL031848.2-201ENST00000607670 837 ntBASIC22.03■■□□□ 1.12
VPS11Q9H270 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS11Q9H270 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.03■■□□□ 1.12
VPS11Q9H270 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
VPS11Q9H270 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS11Q9H270 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
VPS11Q9H270 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
VPS11Q9H270 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VPS11Q9H270 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.02■■□□□ 1.11
VPS11Q9H270 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS11Q9H270 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
VPS11Q9H270 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS11Q9H270 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.01■■□□□ 1.11
VPS11Q9H270 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.01■■□□□ 1.11
VPS11Q9H270 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS11Q9H270 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
VPS11Q9H270 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
VPS11Q9H270 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22■■□□□ 1.11
VPS11Q9H270 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
VPS11Q9H270 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22■■□□□ 1.11
VPS11Q9H270 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22■■□□□ 1.11
VPS11Q9H270 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22■■□□□ 1.11
VPS11Q9H270 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
VPS11Q9H270 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 AC026310.3-201ENST00000625186 2373 ntBASIC22■■□□□ 1.11
VPS11Q9H270 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22■■□□□ 1.11
VPS11Q9H270 AC005703.6-201ENST00000623265 1329 ntBASIC22■■□□□ 1.11
VPS11Q9H270 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22■■□□□ 1.11
VPS11Q9H270 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
VPS11Q9H270 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS11Q9H270 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.99■■□□□ 1.11
VPS11Q9H270 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS11Q9H270 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS11Q9H270 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS11Q9H270 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.99■■□□□ 1.11
VPS11Q9H270 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
VPS11Q9H270 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS11Q9H270 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms