Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS35Q96QK1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS35Q96QK1 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS35Q96QK1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS35Q96QK1 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS35Q96QK1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VPS35Q96QK1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS35Q96QK1 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS35Q96QK1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 AC008764.7-201ENST00000593779 1081 ntBASIC21.81■■□□□ 1.08
VPS35Q96QK1 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS35Q96QK1 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.81■■□□□ 1.08
VPS35Q96QK1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS35Q96QK1 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS35Q96QK1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS35Q96QK1 AC099791.1-201ENST00000416440 715 ntBASIC21.8■■□□□ 1.08
VPS35Q96QK1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS35Q96QK1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS35Q96QK1 AL031602.1-201ENST00000633169 911 ntBASIC21.8■■□□□ 1.08
VPS35Q96QK1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
VPS35Q96QK1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS35Q96QK1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS35Q96QK1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
VPS35Q96QK1 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS35Q96QK1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS35Q96QK1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS35Q96QK1 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS35Q96QK1 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.79■■□□□ 1.08
VPS35Q96QK1 AC068587.7-201ENST00000641602 218 ntBASIC21.79■■□□□ 1.08
VPS35Q96QK1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
VPS35Q96QK1 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS35Q96QK1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS35Q96QK1 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS35Q96QK1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
VPS35Q96QK1 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS35Q96QK1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
VPS35Q96QK1 AP005435.1-201ENST00000529293 1178 ntBASIC21.78■■□□□ 1.08
VPS35Q96QK1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS35Q96QK1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
VPS35Q96QK1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
VPS35Q96QK1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.77■■□□□ 1.08
VPS35Q96QK1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
VPS35Q96QK1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
VPS35Q96QK1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.77■■□□□ 1.08
VPS35Q96QK1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.77■■□□□ 1.08
VPS35Q96QK1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.77■■□□□ 1.08
VPS35Q96QK1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
VPS35Q96QK1 CA15P2-201ENST00000611168 834 ntBASIC21.77■■□□□ 1.08
VPS35Q96QK1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS35Q96QK1 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
VPS35Q96QK1 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS35Q96QK1 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
VPS35Q96QK1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS35Q96QK1 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS35Q96QK1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS35Q96QK1 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
VPS35Q96QK1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.76■■□□□ 1.07
VPS35Q96QK1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS35Q96QK1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS35Q96QK1 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.76■■□□□ 1.07
VPS35Q96QK1 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS35Q96QK1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS35Q96QK1 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 AC126544.1-201ENST00000580842 1059 ntBASIC21.75■■□□□ 1.07
VPS35Q96QK1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS35Q96QK1 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
VPS35Q96QK1 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS35Q96QK1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS35Q96QK1 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS35Q96QK1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS35Q96QK1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS35Q96QK1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms