Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.5■■□□□ 1.19
SHROOM3Q8TF72 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.5■■□□□ 1.19
SHROOM3Q8TF72 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC22.5■■□□□ 1.19
SHROOM3Q8TF72 AC087742.1-201ENST00000575880 1738 ntBASIC22.5■■□□□ 1.19
SHROOM3Q8TF72 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SHROOM3Q8TF72 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.5■■□□□ 1.19
SHROOM3Q8TF72 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.49■■□□□ 1.19
SHROOM3Q8TF72 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 AC024257.2-201ENST00000549699 147 ntBASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 MIR3181-201ENST00000578512 73 ntBASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
SHROOM3Q8TF72 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.47■■□□□ 1.19
SHROOM3Q8TF72 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 AC106739.1-201ENST00000617035 715 ntBASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC22.46■■□□□ 1.19
SHROOM3Q8TF72 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 AC139530.1-201ENST00000575312 1977 ntBASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 AC142381.2-201ENST00000566120 298 ntBASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SHROOM3Q8TF72 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 GUSBP5-202ENST00000510805 1989 ntBASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SHROOM3Q8TF72 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 UNC93B3-201ENST00000308076 687 ntBASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 AL138724.1-201ENST00000606771 1088 ntBASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms