Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 AC004854.2-201ENST00000608450 1441 ntBASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
USHBP1Q8N6Y0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC29.27■■■□□ 2.28
USHBP1Q8N6Y0 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC29.27■■■□□ 2.28
USHBP1Q8N6Y0 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC29.27■■■□□ 2.28
USHBP1Q8N6Y0 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 AC006015.1-201ENST00000429970 570 ntBASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 GALNS-213ENST00000569433 723 ntTSL 3 BASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
USHBP1Q8N6Y0 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 AC080038.1-201ENST00000611274 1154 ntBASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC29.25■■■□□ 2.27
USHBP1Q8N6Y0 AP004607.4-201ENST00000530158 1459 ntBASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 COX20-201ENST00000366528 568 ntTSL 2 BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 HLA-L-209ENST00000420110 1011 ntBASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
USHBP1Q8N6Y0 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 STX7-201ENST00000367937 1090 ntTSL 5 BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 AC137761.2-201ENST00000561729 223 ntBASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 AC145350.3-201ENST00000569033 163 ntBASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 SMUG1P1-201ENST00000590640 811 ntBASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
USHBP1Q8N6Y0 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
USHBP1Q8N6Y0 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
USHBP1Q8N6Y0 DBI-210ENST00000542275 757 ntTSL 5 BASIC29.22■■■□□ 2.27
USHBP1Q8N6Y0 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC29.22■■■□□ 2.27
USHBP1Q8N6Y0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
USHBP1Q8N6Y0 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
USHBP1Q8N6Y0 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC29.22■■■□□ 2.27
USHBP1Q8N6Y0 BX005040.4-201ENST00000637145 1518 ntBASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 RAP2CP1-201ENST00000605103 478 ntBASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
USHBP1Q8N6Y0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
USHBP1Q8N6Y0 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC29.2■■■□□ 2.27
USHBP1Q8N6Y0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC29.2■■■□□ 2.27
USHBP1Q8N6Y0 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
USHBP1Q8N6Y0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC29.2■■■□□ 2.26
USHBP1Q8N6Y0 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC29.2■■■□□ 2.26
USHBP1Q8N6Y0 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC29.2■■■□□ 2.26
USHBP1Q8N6Y0 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC29.2■■■□□ 2.26
USHBP1Q8N6Y0 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC29.2■■■□□ 2.26
USHBP1Q8N6Y0 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 CDCA4P2-201ENST00000441182 718 ntBASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC29.19■■■□□ 2.26
USHBP1Q8N6Y0 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
USHBP1Q8N6Y0 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
USHBP1Q8N6Y0 AC016769.1-201ENST00000409132 1010 ntBASIC29.18■■■□□ 2.26
USHBP1Q8N6Y0 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms