Protein–RNA interactions for Protein: Q8IUD6

RNF135, E3 ubiquitin-protein ligase RNF135, humanhuman

Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF135Q8IUD6 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF135Q8IUD6 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF135Q8IUD6 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
RNF135Q8IUD6 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.28■■□□□ 1.32
RNF135Q8IUD6 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.28■■□□□ 1.32
RNF135Q8IUD6 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
RNF135Q8IUD6 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.28■■□□□ 1.32
RNF135Q8IUD6 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RNF135Q8IUD6 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
RNF135Q8IUD6 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF135Q8IUD6 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF135Q8IUD6 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.25■■□□□ 1.31
RNF135Q8IUD6 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.25■■□□□ 1.31
RNF135Q8IUD6 AL499627.2-201ENST00000606283 725 ntBASIC23.25■■□□□ 1.31
RNF135Q8IUD6 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF135Q8IUD6 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.25■■□□□ 1.31
RNF135Q8IUD6 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF135Q8IUD6 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF135Q8IUD6 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF135Q8IUD6 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.24■■□□□ 1.31
RNF135Q8IUD6 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.24■■□□□ 1.31
RNF135Q8IUD6 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.24■■□□□ 1.31
RNF135Q8IUD6 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.24■■□□□ 1.31
RNF135Q8IUD6 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF135Q8IUD6 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF135Q8IUD6 AC133637.1-201ENST00000624115 1537 ntBASIC23.23■■□□□ 1.31
RNF135Q8IUD6 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF135Q8IUD6 AC004812.2-201ENST00000611079 2094 ntBASIC23.23■■□□□ 1.31
RNF135Q8IUD6 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
RNF135Q8IUD6 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF135Q8IUD6 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF135Q8IUD6 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
RNF135Q8IUD6 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF135Q8IUD6 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF135Q8IUD6 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.23■■□□□ 1.31
RNF135Q8IUD6 AC010525.1-201ENST00000585559 441 ntBASIC23.23■■□□□ 1.31
RNF135Q8IUD6 WT1-AS_3.1-201ENST00000613262 234 ntBASIC23.23■■□□□ 1.31
RNF135Q8IUD6 AC105233.4-201ENST00000642045 216 ntBASIC23.23■■□□□ 1.31
RNF135Q8IUD6 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 LINC00543-201ENST00000567234 1845 ntBASIC23.22■■□□□ 1.31
RNF135Q8IUD6 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.22■■□□□ 1.31
RNF135Q8IUD6 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 GPX1P1-201ENST00000388829 606 ntBASIC23.21■■□□□ 1.31
RNF135Q8IUD6 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF135Q8IUD6 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF135Q8IUD6 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF135Q8IUD6 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF135Q8IUD6 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms