Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.32■■□□□ 1
RNF111Q6ZNA4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF111Q6ZNA4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF111Q6ZNA4 MIR6722-201ENST00000617286 78 ntBASIC21.31■■□□□ 1
RNF111Q6ZNA4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.31■■□□□ 1
RNF111Q6ZNA4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF111Q6ZNA4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF111Q6ZNA4 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RNF111Q6ZNA4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.3■■□□□ 1
RNF111Q6ZNA4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
RNF111Q6ZNA4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.3■■□□□ 1
RNF111Q6ZNA4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF111Q6ZNA4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF111Q6ZNA4 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.3■■□□□ 1
RNF111Q6ZNA4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.3■■□□□ 1
RNF111Q6ZNA4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.3■■□□□ 1
RNF111Q6ZNA4 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.3■■□□□ 1
RNF111Q6ZNA4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF111Q6ZNA4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
RNF111Q6ZNA4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF111Q6ZNA4 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF111Q6ZNA4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RNF111Q6ZNA4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF111Q6ZNA4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RNF111Q6ZNA4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.29■■□□□ 1
RNF111Q6ZNA4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.29■■□□□ 1
RNF111Q6ZNA4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RNF111Q6ZNA4 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.29■■□□□ 1
RNF111Q6ZNA4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.29■■□□□ 1
RNF111Q6ZNA4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RNF111Q6ZNA4 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RNF111Q6ZNA4 AC092053.2-201ENST00000640557 1818 ntBASIC21.29■■□□□ 1
RNF111Q6ZNA4 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF111Q6ZNA4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF111Q6ZNA4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
RNF111Q6ZNA4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RNF111Q6ZNA4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
RNF111Q6ZNA4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.28■■□□□ 1
RNF111Q6ZNA4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.28■■□□□ 1
RNF111Q6ZNA4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.28■■□□□ 1
RNF111Q6ZNA4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RNF111Q6ZNA4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.27■■□□□ 1
RNF111Q6ZNA4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.27■■□□□ 1
RNF111Q6ZNA4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 AL356441.2-201ENST00000443009 864 ntBASIC21.27■■□□□ 1
RNF111Q6ZNA4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.27■■□□□ 1
RNF111Q6ZNA4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.27■■□□□ 1
RNF111Q6ZNA4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF111Q6ZNA4 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
RNF111Q6ZNA4 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.27■■□□□ 1
RNF111Q6ZNA4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.27■□□□□ 0.99
RNF111Q6ZNA4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF111Q6ZNA4 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF111Q6ZNA4 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF111Q6ZNA4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.25■□□□□ 0.99
RNF111Q6ZNA4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
RNF111Q6ZNA4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.25■□□□□ 0.99
RNF111Q6ZNA4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.25■□□□□ 0.99
RNF111Q6ZNA4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
RNF111Q6ZNA4 AC079630.1-202ENST00000618127 1840 ntBASIC21.25■□□□□ 0.99
RNF111Q6ZNA4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms