Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
KRT39Q6A163 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
KRT39Q6A163 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.77■■□□□ 1.4
KRT39Q6A163 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.77■■□□□ 1.4
KRT39Q6A163 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.77■■□□□ 1.4
KRT39Q6A163 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.77■■□□□ 1.4
KRT39Q6A163 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
KRT39Q6A163 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.77■■□□□ 1.4
KRT39Q6A163 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
KRT39Q6A163 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
KRT39Q6A163 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
KRT39Q6A163 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
KRT39Q6A163 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
KRT39Q6A163 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.76■■□□□ 1.39
KRT39Q6A163 AC136469.2-201ENST00000623944 1028 ntBASIC23.76■■□□□ 1.39
KRT39Q6A163 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
KRT39Q6A163 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.76■■□□□ 1.39
KRT39Q6A163 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
KRT39Q6A163 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.76■■□□□ 1.39
KRT39Q6A163 AC127496.7-201ENST00000625110 1798 ntBASIC23.75■■□□□ 1.39
KRT39Q6A163 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
KRT39Q6A163 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
KRT39Q6A163 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
KRT39Q6A163 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
KRT39Q6A163 UNC93B3-201ENST00000308076 687 ntBASIC23.75■■□□□ 1.39
KRT39Q6A163 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.75■■□□□ 1.39
KRT39Q6A163 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
KRT39Q6A163 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
KRT39Q6A163 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.75■■□□□ 1.39
KRT39Q6A163 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
KRT39Q6A163 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
KRT39Q6A163 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
KRT39Q6A163 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC23.75■■□□□ 1.39
KRT39Q6A163 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.75■■□□□ 1.39
KRT39Q6A163 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
KRT39Q6A163 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
KRT39Q6A163 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
KRT39Q6A163 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.75■■□□□ 1.39
KRT39Q6A163 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
KRT39Q6A163 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
KRT39Q6A163 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC23.74■■□□□ 1.39
KRT39Q6A163 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
KRT39Q6A163 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
KRT39Q6A163 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.74■■□□□ 1.39
KRT39Q6A163 OR2I1P-207ENST00000453522 948 ntBASIC23.74■■□□□ 1.39
KRT39Q6A163 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.74■■□□□ 1.39
KRT39Q6A163 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
KRT39Q6A163 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
KRT39Q6A163 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
KRT39Q6A163 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
KRT39Q6A163 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
KRT39Q6A163 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
KRT39Q6A163 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.73■■□□□ 1.39
KRT39Q6A163 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
KRT39Q6A163 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
KRT39Q6A163 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
KRT39Q6A163 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
KRT39Q6A163 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.73■■□□□ 1.39
KRT39Q6A163 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
KRT39Q6A163 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.73■■□□□ 1.39
KRT39Q6A163 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
KRT39Q6A163 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
KRT39Q6A163 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
KRT39Q6A163 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
KRT39Q6A163 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
KRT39Q6A163 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
KRT39Q6A163 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
KRT39Q6A163 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
KRT39Q6A163 AL117328.2-201ENST00000624617 1940 ntBASIC23.72■■□□□ 1.39
KRT39Q6A163 GUSBP5-202ENST00000510805 1989 ntBASIC23.72■■□□□ 1.39
KRT39Q6A163 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
KRT39Q6A163 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
KRT39Q6A163 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
KRT39Q6A163 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
KRT39Q6A163 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.71■■□□□ 1.39
KRT39Q6A163 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
KRT39Q6A163 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
KRT39Q6A163 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
KRT39Q6A163 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.71■■□□□ 1.39
KRT39Q6A163 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
KRT39Q6A163 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
KRT39Q6A163 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
KRT39Q6A163 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
KRT39Q6A163 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
KRT39Q6A163 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
KRT39Q6A163 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
KRT39Q6A163 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
KRT39Q6A163 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
KRT39Q6A163 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
KRT39Q6A163 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
KRT39Q6A163 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
KRT39Q6A163 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
KRT39Q6A163 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.7■■□□□ 1.38
KRT39Q6A163 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.7■■□□□ 1.38
KRT39Q6A163 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.7■■□□□ 1.38
KRT39Q6A163 AL031602.1-201ENST00000633169 911 ntBASIC23.7■■□□□ 1.38
KRT39Q6A163 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
KRT39Q6A163 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
KRT39Q6A163 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
KRT39Q6A163 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms