Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC144BQ3MJ40 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC144BQ3MJ40 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC144BQ3MJ40 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.48■■□□□ 1.67
CCDC144BQ3MJ40 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC144BQ3MJ40 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC144BQ3MJ40 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
CCDC144BQ3MJ40 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC25.48■■□□□ 1.67
CCDC144BQ3MJ40 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC25.48■■□□□ 1.67
CCDC144BQ3MJ40 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 TSPY26P-201ENST00000476365 1326 ntBASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 SLC47A1P1-202ENST00000449666 945 ntBASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC144BQ3MJ40 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
CCDC144BQ3MJ40 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
CCDC144BQ3MJ40 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25.45■■□□□ 1.67
CCDC144BQ3MJ40 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
CCDC144BQ3MJ40 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 AC034268.1-201ENST00000441047 882 ntBASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CCDC144BQ3MJ40 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.44■■□□□ 1.66
CCDC144BQ3MJ40 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC144BQ3MJ40 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC144BQ3MJ40 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC144BQ3MJ40 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.44■■□□□ 1.66
CCDC144BQ3MJ40 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.44■■□□□ 1.66
CCDC144BQ3MJ40 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC144BQ3MJ40 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CCDC144BQ3MJ40 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 AL031602.1-201ENST00000633169 911 ntBASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCDC144BQ3MJ40 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 TERT-206ENST00000508104 2486 ntTSL 5 BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 YBX1P1-201ENST00000445822 960 ntBASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CCDC144BQ3MJ40 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCDC144BQ3MJ40 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCDC144BQ3MJ40 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.41■■□□□ 1.66
CCDC144BQ3MJ40 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCDC144BQ3MJ40 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.41■■□□□ 1.66
CCDC144BQ3MJ40 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.4■■□□□ 1.66
CCDC144BQ3MJ40 C1orf229-201ENST00000623686 2258 ntBASIC25.4■■□□□ 1.66
CCDC144BQ3MJ40 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC144BQ3MJ40 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC144BQ3MJ40 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC144BQ3MJ40 AICDA-202ENST00000537228 667 ntTSL 5 BASIC25.4■■□□□ 1.66
CCDC144BQ3MJ40 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.4■■□□□ 1.66
CCDC144BQ3MJ40 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC144BQ3MJ40 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.39■■□□□ 1.66
CCDC144BQ3MJ40 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC144BQ3MJ40 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC144BQ3MJ40 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.39■■□□□ 1.66
CCDC144BQ3MJ40 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC25.39■■□□□ 1.66
CCDC144BQ3MJ40 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC25.39■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms