Protein–RNA interactions for Protein: P60709

ACTB, Actin, cytoplasmic 1, humanhuman

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTBP60709 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.84■□□□□ 0.61
ACTBP60709 AL033527.3-201ENST00000566366 1196 ntBASIC18.84■□□□□ 0.61
ACTBP60709 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.84■□□□□ 0.61
ACTBP60709 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ACTBP60709 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ACTBP60709 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ACTBP60709 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC18.84■□□□□ 0.61
ACTBP60709 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.84■□□□□ 0.61
ACTBP60709 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
ACTBP60709 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ACTBP60709 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ACTBP60709 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ACTBP60709 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.83■□□□□ 0.61
ACTBP60709 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
ACTBP60709 GUK1-208ENST00000366728 842 ntTSL 2 BASIC18.83■□□□□ 0.6
ACTBP60709 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ACTBP60709 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ACTBP60709 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
ACTBP60709 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
ACTBP60709 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ACTBP60709 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ACTBP60709 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
ACTBP60709 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
ACTBP60709 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
ACTBP60709 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ACTBP60709 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
ACTBP60709 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ACTBP60709 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.82■□□□□ 0.6
ACTBP60709 AC074183.2-201ENST00000623112 922 ntBASIC18.82■□□□□ 0.6
ACTBP60709 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ACTBP60709 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ACTBP60709 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ACTBP60709 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.81■□□□□ 0.6
ACTBP60709 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.81■□□□□ 0.6
ACTBP60709 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC18.81■□□□□ 0.6
ACTBP60709 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC18.81■□□□□ 0.6
ACTBP60709 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
ACTBP60709 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.81■□□□□ 0.6
ACTBP60709 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.81■□□□□ 0.6
ACTBP60709 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.81■□□□□ 0.6
ACTBP60709 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
ACTBP60709 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ACTBP60709 AC087742.1-201ENST00000575880 1738 ntBASIC18.8■□□□□ 0.6
ACTBP60709 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ACTBP60709 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.8■□□□□ 0.6
ACTBP60709 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ACTBP60709 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.8■□□□□ 0.6
ACTBP60709 AC019171.1-201ENST00000601251 1056 ntBASIC18.8■□□□□ 0.6
ACTBP60709 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.8■□□□□ 0.6
ACTBP60709 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.8■□□□□ 0.6
ACTBP60709 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ACTBP60709 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.8■□□□□ 0.6
ACTBP60709 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.8■□□□□ 0.6
ACTBP60709 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.8■□□□□ 0.6
ACTBP60709 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.79■□□□□ 0.6
ACTBP60709 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.79■□□□□ 0.6
ACTBP60709 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.79■□□□□ 0.6
ACTBP60709 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ACTBP60709 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.79■□□□□ 0.6
ACTBP60709 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ACTBP60709 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ACTBP60709 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
ACTBP60709 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 AC010980.1-201ENST00000587192 1142 ntBASIC18.78■□□□□ 0.6
ACTBP60709 FAM99A-202ENST00000538190 1989 ntBASIC18.78■□□□□ 0.6
ACTBP60709 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ACTBP60709 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ACTBP60709 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ACTBP60709 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ACTBP60709 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ACTBP60709 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.77■□□□□ 0.6
ACTBP60709 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ACTBP60709 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms