Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC30.92■■■□□ 2.54
MSH6P52701 AC133041.1-202ENST00000642053 222 ntBASIC30.92■■■□□ 2.54
MSH6P52701 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH6P52701 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH6P52701 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH6P52701 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
MSH6P52701 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH6P52701 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC30.92■■■□□ 2.54
MSH6P52701 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC30.92■■■□□ 2.54
MSH6P52701 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC30.92■■■□□ 2.54
MSH6P52701 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
MSH6P52701 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
MSH6P52701 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.91■■■□□ 2.54
MSH6P52701 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC30.91■■■□□ 2.54
MSH6P52701 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
MSH6P52701 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.91■■■□□ 2.54
MSH6P52701 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
MSH6P52701 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
MSH6P52701 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
MSH6P52701 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
MSH6P52701 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
MSH6P52701 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
MSH6P52701 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
MSH6P52701 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
MSH6P52701 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
MSH6P52701 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
MSH6P52701 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
MSH6P52701 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC30.9■■■□□ 2.54
MSH6P52701 AC098934.4-201ENST00000564127 592 ntBASIC30.9■■■□□ 2.54
MSH6P52701 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
MSH6P52701 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC30.89■■■□□ 2.54
MSH6P52701 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
MSH6P52701 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
MSH6P52701 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
MSH6P52701 SMUG1P1-201ENST00000590640 811 ntBASIC30.88■■■□□ 2.53
MSH6P52701 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
MSH6P52701 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
MSH6P52701 LINC01529-204ENST00000636474 1715 ntBASIC30.87■■■□□ 2.53
MSH6P52701 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC30.87■■■□□ 2.53
MSH6P52701 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
MSH6P52701 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
MSH6P52701 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.86■■■□□ 2.53
MSH6P52701 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC30.86■■■□□ 2.53
MSH6P52701 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC30.86■■■□□ 2.53
MSH6P52701 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC30.86■■■□□ 2.53
MSH6P52701 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
MSH6P52701 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
MSH6P52701 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
MSH6P52701 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
MSH6P52701 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.85■■■□□ 2.53
MSH6P52701 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
MSH6P52701 KRT18P29-201ENST00000397031 1267 ntBASIC30.85■■■□□ 2.53
MSH6P52701 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC30.85■■■□□ 2.53
MSH6P52701 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
MSH6P52701 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC30.85■■■□□ 2.53
MSH6P52701 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
MSH6P52701 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC30.85■■■□□ 2.53
MSH6P52701 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
MSH6P52701 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC30.84■■■□□ 2.53
MSH6P52701 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC30.84■■■□□ 2.53
MSH6P52701 AC144652.1-201ENST00000609974 1624 ntBASIC30.83■■■□□ 2.53
MSH6P52701 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC30.83■■■□□ 2.53
MSH6P52701 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
MSH6P52701 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC30.83■■■□□ 2.53
MSH6P52701 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC30.83■■■□□ 2.53
MSH6P52701 SHF-207ENST00000560540 2062 ntTSL 5 BASIC30.83■■■□□ 2.53
MSH6P52701 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
MSH6P52701 PRORSD1P-201ENST00000295112 541 ntBASIC30.82■■■□□ 2.52
MSH6P52701 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC30.82■■■□□ 2.52
MSH6P52701 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
MSH6P52701 UBE2DNL-204ENST00000602536 740 ntBASIC30.82■■■□□ 2.52
MSH6P52701 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
MSH6P52701 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
MSH6P52701 PARP1-202ENST00000366792 553 ntTSL 3 BASIC30.81■■■□□ 2.52
MSH6P52701 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
MSH6P52701 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
MSH6P52701 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC30.81■■■□□ 2.52
MSH6P52701 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC30.81■■■□□ 2.52
MSH6P52701 AF201337.1-201ENST00000520239 748 ntBASIC30.8■■■□□ 2.52
MSH6P52701 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
MSH6P52701 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC30.8■■■□□ 2.52
MSH6P52701 AC104187.1-201ENST00000607510 612 ntBASIC30.8■■■□□ 2.52
MSH6P52701 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
MSH6P52701 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC30.79■■■□□ 2.52
MSH6P52701 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC30.79■■■□□ 2.52
MSH6P52701 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
MSH6P52701 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
MSH6P52701 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
MSH6P52701 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC30.79■■■□□ 2.52
MSH6P52701 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
MSH6P52701 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC30.79■■■□□ 2.52
MSH6P52701 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC30.79■■■□□ 2.52
MSH6P52701 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC30.79■■■□□ 2.52
MSH6P52701 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
MSH6P52701 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC30.78■■■□□ 2.52
MSH6P52701 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
MSH6P52701 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC30.78■■■□□ 2.52
MSH6P52701 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
MSH6P52701 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
MSH6P52701 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms