Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.55■□□□□ 0.88
RFX3P48380 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RFX3P48380 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.55■□□□□ 0.88
RFX3P48380 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.55■□□□□ 0.88
RFX3P48380 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.55■□□□□ 0.88
RFX3P48380 AL512631.2-201ENST00000604634 923 ntBASIC20.55■□□□□ 0.88
RFX3P48380 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.55■□□□□ 0.88
RFX3P48380 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.55■□□□□ 0.88
RFX3P48380 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.54■□□□□ 0.88
RFX3P48380 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.54■□□□□ 0.88
RFX3P48380 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RFX3P48380 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.54■□□□□ 0.88
RFX3P48380 DUX4L4-201ENST00000566884 1269 ntBASIC20.54■□□□□ 0.88
RFX3P48380 MIR4466-201ENST00000606121 54 ntBASIC20.54■□□□□ 0.88
RFX3P48380 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.54■□□□□ 0.88
RFX3P48380 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX3P48380 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX3P48380 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX3P48380 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX3P48380 AC006455.2-201ENST00000429931 906 ntBASIC20.53■□□□□ 0.88
RFX3P48380 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFX3P48380 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX3P48380 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.53■□□□□ 0.88
RFX3P48380 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.53■□□□□ 0.88
RFX3P48380 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.53■□□□□ 0.88
RFX3P48380 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX3P48380 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX3P48380 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
RFX3P48380 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RFX3P48380 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX3P48380 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFX3P48380 AL136116.3-201ENST00000402907 1138 ntBASIC20.52■□□□□ 0.88
RFX3P48380 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFX3P48380 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.52■□□□□ 0.88
RFX3P48380 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.52■□□□□ 0.88
RFX3P48380 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.52■□□□□ 0.88
RFX3P48380 AC241377.3-202ENST00000626088 1088 ntBASIC20.52■□□□□ 0.88
RFX3P48380 AC241585.3-202ENST00000628937 1088 ntBASIC20.52■□□□□ 0.88
RFX3P48380 AC245100.8-202ENST00000629247 1058 ntBASIC20.52■□□□□ 0.88
RFX3P48380 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.52■□□□□ 0.88
RFX3P48380 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX3P48380 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX3P48380 AC004687.1-201ENST00000579003 1625 ntBASIC20.52■□□□□ 0.88
RFX3P48380 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.52■□□□□ 0.88
RFX3P48380 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFX3P48380 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.51■□□□□ 0.87
RFX3P48380 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX3P48380 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX3P48380 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX3P48380 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX3P48380 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFX3P48380 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
RFX3P48380 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX3P48380 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX3P48380 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX3P48380 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RFX3P48380 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RFX3P48380 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX3P48380 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX3P48380 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX3P48380 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RFX3P48380 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFX3P48380 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX3P48380 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFX3P48380 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
RFX3P48380 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RFX3P48380 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX3P48380 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX3P48380 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX3P48380 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.49■□□□□ 0.87
RFX3P48380 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX3P48380 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RFX3P48380 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX3P48380 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.49■□□□□ 0.87
RFX3P48380 pRNA.6-201ENST00000610482 90 ntBASIC20.49■□□□□ 0.87
RFX3P48380 pRNA.5-201ENST00000612139 90 ntBASIC20.49■□□□□ 0.87
RFX3P48380 pRNA.11-201ENST00000618423 90 ntBASIC20.49■□□□□ 0.87
RFX3P48380 pRNA.13-201ENST00000619112 90 ntBASIC20.49■□□□□ 0.87
RFX3P48380 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX3P48380 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
RFX3P48380 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.49■□□□□ 0.87
RFX3P48380 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms